| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | AFE_2817 |
|---|
| Symbol | radA |
|---|
| ID | 7136160 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011761 |
|---|
| Strand | - |
|---|
| Start bp | 2500594 |
|---|
| End bp | 2501952 |
|---|
| Gene Length | 1359 bp |
|---|
| Protein Length | 452 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 643531170 |
|---|
| Product | DNA repair protein RadA |
|---|
| Protein accession | YP_002427187 |
|---|
| Protein GI | 218666573 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1066] Predicted ATP-dependent serine protease |
|---|
| TIGRFAM ID | [TIGR00416] DNA repair protein RadA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCGCG ACAAAACCCT TTTCGTTTGC CAGGAATGCG GCAGTATCAG CAATAAATGG
CTGGGACGCT GTCCAGATTG CGGTGCATGG AACAGCTTCG TCGAACAGCG CGTGGAGAAG
ACCGTGGCCA AATCCCAAAC CACCTATGCC ACGGCCAGCC CGCCGCAATT TCTGCATGCG
GTGCCGATCA CGGATGTGGG GCGCAGCACG ACGGGCCTGG CAGAACTCGA CCGGGTGCTG
GGCGGCGGGC AGGTGCCGGG GGCAGCCATT CTTCTGGGCG GGGAGCCGGG CATCGGAAAA
TCCACCCTCC TGCTCCAGAC TGCCCATCAC CTGGCTCAGG TCAGCAAGGT GCTTTACGTC
ACCGGGGAGG AGTCGGCGGC ACAAGTCGCC TTACGGGCGC AGCGCCTGGG GCTGGGCCGG
AGCCCCGTAC GGGTGGTCGC CGAAAACCAT CTTGAAGCGA TCGAGGGGCT GCTCCGGGGC
GAACAGCCCG CACTGGTGCT GGTGGATTCC ATTCAGACCG TCTATACCGA CACACTGCAA
TCGGCCCCCG GCTCGGTGGC GCAAGTGCGG GAGTGTGCGG CACGCCTGGT GCGTTTCGCC
AAGGCGACGG GCACCACGGT GTGGCTGGTG GGTCATGTGA CCAAGGAGGG AGCCATTGCT
GGCCCTCGTG TGCTCGAACA CATGGTGGAT ACCGTGCTCT ATTTCGAAGG GGAGGCGGGT
AGCCCCTACC GGATCGTGCG CGCCATCAAG AACCGCTTTG GGGCGGCCAA CGAACTGGGT
GTTTTCCAGA TGCATGAAGA GGGCTTGAGC GAGGTCGCCA ATCCTTCGCA GCTTTTCCTG
TCGCAGCATG AGCGACCCGT GGCAGGGAGC GTGGTGCTGG CGACGCAGGA AGGAACCCGC
CCCCTGCTGG TGGAGGTGCA GGCGCTGGTA ACCCCGAGTC CTCTGGCGAA TCCGCGCAGG
GTTGCCATCG GTCTGGACCC CAACCGCCTT TCCCTCCTTC TGGCCATTCT GCATCGTCAC
GGTGACAGCA TGTTTTTTGA TCAGGATGTC TTTGTGAATA TCGCGGGGGG GATCAAAGTC
AACGAACCTG CCGCCGACCT TGCCGTGGCC CTCGCCTTGG TCAGCAGTTT TCGCAATAAA
CCCCTGGAGG GCCGTCGGGT GGTCTTTGGC GAATTGGGTC TGGCGGGAGA GGTGCGTCCG
GTGGCGGGCA CCGAGGCACG GGTTCGTGAA GCCGTCAAGT TGGGCTTCAA AGGCGCCATT
CTCCCGCGCA GCGACAAGAT TTCGGCTGCC GCCACGTTTA AACTGCACCC GGCGGGCCGC
CTGGGTGATG CAATGGAGGC CGCCTTTGCT GCGGAGTGA
|
|---|
| Protein sequence | MSRDKTLFVC QECGSISNKW LGRCPDCGAW NSFVEQRVEK TVAKSQTTYA TASPPQFLHA
VPITDVGRST TGLAELDRVL GGGQVPGAAI LLGGEPGIGK STLLLQTAHH LAQVSKVLYV
TGEESAAQVA LRAQRLGLGR SPVRVVAENH LEAIEGLLRG EQPALVLVDS IQTVYTDTLQ
SAPGSVAQVR ECAARLVRFA KATGTTVWLV GHVTKEGAIA GPRVLEHMVD TVLYFEGEAG
SPYRIVRAIK NRFGAANELG VFQMHEEGLS EVANPSQLFL SQHERPVAGS VVLATQEGTR
PLLVEVQALV TPSPLANPRR VAIGLDPNRL SLLLAILHRH GDSMFFDQDV FVNIAGGIKV
NEPAADLAVA LALVSSFRNK PLEGRRVVFG ELGLAGEVRP VAGTEARVRE AVKLGFKGAI
LPRSDKISAA ATFKLHPAGR LGDAMEAAFA AE
|
|---|
| |