Gene AFE_2336 details

Gene Information

• Locus tag: AFE_2336
• Symbol: rpoD
• ID: 7135868
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Acidithiobacillus ferrooxidans ATCC 23270
• Kingdom: Bacteria
• Replicon accession: NC_011761
• Strand: -
• Start bp: 2080861
• End bp: 2082735
• Gene Length: 1875 bp
• Protein Length: 624 aa
• Translation table: 11
• GC content: 55%
• IMG OID: 643530701
• Product: RNA polymerase sigma factor RpoD
• Protein accession: YP_002426728
• Protein GI: 218665974
• COG category: [K] Transcription
• COG ID: [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
• TIGRFAM ID: [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain; [TIGR02937] RNA polymerase sigma factor, sigma-70 family

Plasmid Coverage information

• Num covering plasmid clones: 1
• Plasmid unclonability p-value: 0.684077
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGGATAATG AATCTCAGCG GTCTGAGCTG AAGCGGCTTA TTGCGCGTGG TAAAGAGCAA 
GGCTACCTGA CCTATCGCGA GATCAATGAT CATTTGCCGG AAGAGGTTTT CGACCCCGAG 
CAGATGGAAA ATGTCATCTC CATGATCAAT GACATGGGTA TTGAAGTCTT TGAGGAGGCT 
CCGGACGACG ATACCCTGCT GATGGATGGG GAAGGTGGTA CCGTAGTCGC CGCTCAGGAA 
GCGGAAGAAG CGGCAGAGGA AGCCCTGGCC GTGGTCGAGG CGGATATCGG GCGAACCAGT 
GATCCGGTGC GCATGTACAT GCGCGAGATG GGCAGCGTGG AACTGCTCAC GCGTGAAGGC 
GAAATCGAAA TTGCCCGGCG TATCGAAGAT GGTCTGATGC AGGTATTGCG CGCTGTATCG 
ACCTGCCCGA CGACCATCTC TCTTCTTCTG GACGCCGCGG CTCGGGTGGA GCGCGGCGAG 
ACGCGCCTGG ATGAAGTGGT CGACGCCTTT ATTGATCTTA GCGCGCTGGA TGCAGAAACC 
GTCAGTGAGG CAGAAGAAAG CGTGCTGGTG GAAGGCGACG ATCTGGACGT CGATGAGGAT 
GAGGAAGAAT CCGAAGACGG TGATATCGAA GTCGTAGACA AGGGGCCACA GCTCGAAGAT 
GCACTGGAAC GTTTTGCGGT CATCCGTGCT GCGTATACCG CGCTGCTGGC CAGCCATGCC 
GAGGGGGAGA TGCATGGTGA AAGTTATCAG CGGCAGCGCC GGGAGCTCGC CGAACGTTTC 
CTGGAAATCA AACTCAACGG TCGTCAGATT GACGTCATGA CCGACGCCCT GCGCGGGCTA 
ACGGAAGAGG TGCGTCAGTG CGAACGGGAG TTGATGGAAC TGTGCATTGA ACGTGCGCGC 
TTCCCGCGCA AAGAATTTGT GCGCAGTTAT CCCGGTCATG AGGGTGATAT CGGCTGGATT 
GATCAGCAAA TCGCCGCTGG TCATGCCTAT AGTACCCGTT TGGTTGAGTT TCGTGATGAT 
ATCGTGGCGA TCATGAAACG CTTGGCGAAT ATTGAGAAGC GTGCCGGTTT GCCGATTGCC 
GAGATCAAAG AGGCCAGTCG CCTGATGTCC ATTGGTGAGG CCAAGGCGCG GCGTGCCAAG 
AAGGAAATGG TGGAGGCCAA TCTGCGTTTG GTGATCTCTA TCGCCAAGAA GTATACCAAT 
CGTGGCCTGC AGTTCCTGGA TCTGATTCAG GAAGGAAATA TCGGTCTGAT GAAAGCGGTG 
GACAAGTTCG AATACCGACG TGGCTACAAA TTCTCTACTT ATGCGACTTG GTGGATACGC 
CAGGCCATTA CGCGGAGTAT TGCGGATCAG GCGCGGACCA TTCGTATCCC GGTACATATG 
ATCGAAACCA TAAACAAACT CAATCGAATC AGTCGCCAGA TGCTCCAGGA AATGGGACGT 
GAACCGTCGC CTGAAGAGTT GGCAGAACGG ATGGAAATGC CCGAGGATAA AATCCGCAAG 
GTGCTCAAAA TTGCCAAGGA GCCTATCTCC ATGGAGACGC CCATCGGTGA CGATGAAGAT 
TCGCACCTGG GCGACTTCAT CGAAGACCGG AATGTGACGG CGCCAGCGGA TTCTGCCGTT 
AACGCCGCCA TTCGCGAAGT GGTCGAGGAG TTGCTTGATA ATGGCCTGAC AGCGCGGGAA 
GCCAAGGTGT TGCGTATGCG TTTTGGCATC GGGATGAATA CCGACCACAC GCTGGAGGAG 
GTCGGCAAGC AGTTTGACGT TACTCGTGAG CGTATCCGCC AGATTGAAGC CAAGGCGCTG 
CGCAAACTGC GTCATCCCTC TCGATCGGAG CGGTTACGTA GTTTTGTGGA CGGTGAAGTG 
ACGATTCCAT CGTGA 

 

Protein sequence

MDNESQRSEL KRLIARGKEQ GYLTYREIND HLPEEVFDPE QMENVISMIN DMGIEVFEEA 
PDDDTLLMDG EGGTVVAAQE AEEAAEEALA VVEADIGRTS DPVRMYMREM GSVELLTREG 
EIEIARRIED GLMQVLRAVS TCPTTISLLL DAAARVERGE TRLDEVVDAF IDLSALDAET 
VSEAEESVLV EGDDLDVDED EEESEDGDIE VVDKGPQLED ALERFAVIRA AYTALLASHA 
EGEMHGESYQ RQRRELAERF LEIKLNGRQI DVMTDALRGL TEEVRQCERE LMELCIERAR 
FPRKEFVRSY PGHEGDIGWI DQQIAAGHAY STRLVEFRDD IVAIMKRLAN IEKRAGLPIA 
EIKEASRLMS IGEAKARRAK KEMVEANLRL VISIAKKYTN RGLQFLDLIQ EGNIGLMKAV 
DKFEYRRGYK FSTYATWWIR QAITRSIADQ ARTIRIPVHM IETINKLNRI SRQMLQEMGR 
EPSPEELAER MEMPEDKIRK VLKIAKEPIS METPIGDDED SHLGDFIEDR NVTAPADSAV 
NAAIREVVEE LLDNGLTARE AKVLRMRFGI GMNTDHTLEE VGKQFDVTRE RIRQIEAKAL 
RKLRHPSRSE RLRSFVDGEV TIPS