| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | AFE_2312 |
|---|
| Symbol | |
|---|
| ID | 7136759 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011761 |
|---|
| Strand | - |
|---|
| Start bp | 2060969 |
|---|
| End bp | 2062327 |
|---|
| Gene Length | 1359 bp |
|---|
| Protein Length | 452 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 643530677 |
|---|
| Product | sugar transporter family protein |
|---|
| Protein accession | YP_002426707 |
|---|
| Protein GI | 218665333 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00879] MFS transporter, sugar porter (SP) family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.588743 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCGAGA CAGAGACACG CCAACCCAGG AAGGACTGGC GATTTATTTT GATTGCAATT
GTCGCTGGGC TCGGTGGATT GCTATTTGGC TACGACACAG GTGTCGTAGC TGGTGTTCTC
TTGTTTTTAA ATCATGTTTT TCACTTTGAT GCAAGCATGA AGGGGCTATT TGTTGCAATC
GCACTGGCCG CTGCCGCCGT GGGCGCAGCA TTTGCCGGAG CACTTGCAGA TGCTTTCGGA
CGTCGCGCCG TACTGATCGT TGCCGCCGTT CTCTTCTCAG CAGGTGCGAT TTTGGCCTCA
GTGGCTTGGA CCATACCCGT TCTCTTCCTG GGCCGGGTTA TGGTAGGAGC CGCCATTGGG
GTGTCTTCCA TGATTACCCC TCTGTACCTA TCAGAAATCA CAGCGGCGCA TTGGCGCGGT
GCCATTGTAA CCATCAATCA ATTTTATATT ACCGTGGGTA TTTTTCTATC CTATGTAGTT
GATTATATGC TCTCTGGTGT CACCGATGGT TGGCGATGGA TGCTGGCAAT TGGTGCCATT
CCCGGCTTCA TCTTGCTTGG GGGGATGATG ATCCTGCCGG AAAGTCCGCG ATGGTTGGCG
GGGCGTGATC TTATAGAAAA GGCGACGGCA GGACTTCGTT TTTTGCGGGG ACGTCAGGAT
GTTTCCGAAG AGCTTGGAGA TCTACGTCGC GATGTTGTTG AGGGCAGCCG TCGGGCAGCA
CCCTGGTCGT TACTTCTGGA ACGTAAGGTT CGTAAGCCAC TGATTATTGG CATCGGTCTG
GCAGTTTTTC AGCAAATAAC GGGCATCAAT GTGGTTATTT ATTTTGCACC GACCATTTTT
CAGGATGCCG GTTTATCCTC GGCTTCGGTT TCCATTCTCG CCACCGTAGG TATTGGTGCC
GTCAATGTGA TCATGACAAG CGTCGCAATG CGGTTACTGG ATACCGCCGG TCGCCGCAAA
ATTCTGCTTT TTGGCCTCTG TGGTATGCTG GTCAGTCTTA TTGTTATTGG TATTGGATTC
ATGATACAGC TTCACGGTGC ACTGGCTTAT ATCATCGTGG GCATGGTTGC TATCTTTGTC
GCTTTTTTTG CTATTGGCCT TGGACCTATT TTCTGGCTGA TGATCTCTGA GATTTTTCCG
CTCGCTATCC GAGGTAGGGC CATGAGTATT GCAACCGTTG CCAATTGGGT CTCAAACATG
GTGATTTCCG GTATATTCCT AGACTTGTTA TTGATGATTG GACGCGGCCC TACTTTCATA
TTTTATGCGT CAATGACTGT TTTGGCGATC CTGTTCACCC TATGGATTGT ACCAGAAACA
AAGGGTAAGA CCCTGGAGCA GATCGAGGAT AGTCTATAA
|
|---|
| Protein sequence | MRETETRQPR KDWRFILIAI VAGLGGLLFG YDTGVVAGVL LFLNHVFHFD ASMKGLFVAI
ALAAAAVGAA FAGALADAFG RRAVLIVAAV LFSAGAILAS VAWTIPVLFL GRVMVGAAIG
VSSMITPLYL SEITAAHWRG AIVTINQFYI TVGIFLSYVV DYMLSGVTDG WRWMLAIGAI
PGFILLGGMM ILPESPRWLA GRDLIEKATA GLRFLRGRQD VSEELGDLRR DVVEGSRRAA
PWSLLLERKV RKPLIIGIGL AVFQQITGIN VVIYFAPTIF QDAGLSSASV SILATVGIGA
VNVIMTSVAM RLLDTAGRRK ILLFGLCGML VSLIVIGIGF MIQLHGALAY IIVGMVAIFV
AFFAIGLGPI FWLMISEIFP LAIRGRAMSI ATVANWVSNM VISGIFLDLL LMIGRGPTFI
FYASMTVLAI LFTLWIVPET KGKTLEQIED SL
|
|---|
| |