Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | AFE_2104 |
Symbol | |
ID | 7135881 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
Kingdom | Bacteria |
Replicon accession | NC_011761 |
Strand | + |
Start bp | 1855079 |
End bp | 1858183 |
Gene Length | 3105 bp |
Protein Length | 1034 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 643530474 |
Product | transporter, AcrB/AcrD/AcrF family |
Protein accession | YP_002426506 |
Protein GI | 218667070 |
COG category | [V] Defense mechanisms |
COG ID | [COG0841] Cation/multidrug efflux pump |
TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAACTTAT CGGCACCCTT TATTCGTCGC CCCGTCGCCA CAACAGTACT CGCAGTAGCC GTGGCCTTGC TGGGTTTATT TGCCTACTTG CAATTACCCA CGGCTTTACT TCCCAACGTC AGCTTTCCGA TGGTGATGGT CACCGCAGAA CTCCCGGGAG CCAGCCCCAA AACCATGTCC AGCGCGGTAG CCACCCCACT GGAAAGGCAA TTTGCCAGCA TTCCCGGCCT CAACTCCATG AGTGCCGTCA GTCAAAACGG AGTGACCCAG ATCACCCTGC AGTTCGATCT CAGCAAATCC CCGCTGGGTG CCACCCAGCA AGTTTCCAAC GCCGTTTCCC AGGCTCAGCA TTTTTTACCA CCGGGCATGC CCGAGCCGCC TTCGGTCCGG CAAATGAATC CTTCGGCCCA GCCCGTTTTT TATATTGGCA TGTCTGCTCC CAACATGCCG CTTTATGATC TGGACAAATA CGCTCAAACC AAGGTCAGCA CGGCATTATC AGGTATATCC GGGGTATCTG ACGTGCAAAT TTACGGGGCG CAAACCTACG CCGTGCGCAT TTATGTGAAT CCTTTTGCCC TTTCTGCCCG GGGCCTGAGT CTGCAGGCCG TACAAAGCGC CCTGGGTAAT GCCAACGTCA ACCTGCCCGG TGGCACCCTG GATGGGGGTG ATCAGGCTTT CGCCACCCAG GTACACGGTC AGTTACATAC CGCAGAAGCC TACAACCATC TGGTTCTGGC CTATGAGGGC GGACAGGCGG TTCCCCTCAG TGCGGTTGGC AAGGCCGTCA ACAGTACCCA GGATAACCAA CAGGAAACCT GGATCAACAA AACTCCCGGT ATTGTTCTCG CTGTAACACG ACAGCCAGGC AGCAATACCG TCGCCATTTC CAACAAAATC CGCGCCATGT TGCCGCAATT GCAGGCTGCC ATGCCCGGCG GGGTGCATCT GACCAATGTT TTCGATTTGG CCGATTACAT TCGCGCGGCG GTACACGAAG TACTGATGAC CCTCATCCTC GCCAGCATTC TGGTAGCAGG CGTCATGTGG CTGTTTCTGC GCCGCCCCTC GGCCACCCTC ATCGGCGCAG TCGCCATACC CCTTTCCTTG CTGGGTACCT TTCTGGTCAT GATGCTGCTC GGCTTCAGTA TCAATACCCT GACCTTGCTG GCGCTGACTC TTTCGGTGGG CTTTGTGGTG GATGATGCCG TGGTGATGCT GGAAAACATC AACCGACACA TCGACCGGGG AGAAACCGGC ATGACTGCCG CCCTCAATGG CAGCCGGGAA ATCAGTTTTA CGGTCCTGTC CATGACCTTG TCCCTGTCCA TCATTTTTCT TCCTCTGATT TTTCTGGGTG GCTTTGTCGG CCATTTGTTC TCGGACTTTG GGGTCAGTAT TGCCGTGGTC ATCCTGATTT CCGGGATGGT CGCCCTGAGC GTCACGCCCA TGCTTTGCAG TCGTTATCTC AAACCCAATC ACGCCCATAC CCCGACCGAC CTGCACGATA CCGGTCACTT GCCTGAAGAC GGGATTTTTC AGCGATTTTT CAAGGGCAGT CGCGATTTTT ATATTCGCAC CCTGAAAGTT GCCTTGCAGC ACAAATACTG GATGCTGGCC CTGGCTGGAC TTTCACTGGC GGGTAGTGTC TGGCTGGTAA TGATTGTTCC CAAGGCTTTT TTACCTAGCC AGAACTCGGG AATGATCAAT GCCAATATTG AATACCCTAC CGGGATGACC TTTGCAGAAG TCAGCCATGA GCAGTCAGAA ATCGCCCGGG TGGTGAAATC CAATCCACGT ATTCAATCGG TGGTGTCTTC TGCTGGACAA GGGCCCGGCG GTTTCGGTAG CAGCACTTCG GGACACATGT TTATTCACAT TCGCAATGGG TACGCGCCAG AAACGGAAGA AATCATCGAG GATCTCAACC GTGCCACACA GGGCTTCCAC AATGCCCAGG TTGTATTCCA AGGACCACAG AGCGCCCACT CAGGTACCGC GAGTGATAAT GGCAGCTACG TTTATGAACT CATTGGCAAC AACTGGACCG ACCTCAACGC CGCCACCCTG AGAATGACCG CAGCGCTACG CCGTTTGCCG CAACTCAGCT CCGTCAGCAA CAGCCTGCAA AACAATAACC CCCAGGTGGC CATCAAAATC AACCGGCCCT GGGCCACGGC CCTCGGCGTT ACTCCGGCCG CCATTGAAAA CACCCTCGGT CTCGCCTTCG GTGGCCATGA GGTAGGAACG ATTTATGGTG CCAATGACCA ATATGAAGTC ATTATGGAAC TCGAACCCCG CTATCAACAC AACATCAATG CCCTCTCGAC CCTCAGCGTA GCAGGGGCTG GGGGCACGCT GGTACCGCTC TCGGCGGTGG CAGAATTTCA TTACGATGCC GCTCCCCTCA CCCTGATGCA ACACAACGGT CAGCCCTCAA CCACGATCTC CTTCAATCTC GCGCCGGGGG CCAACCTCGG CCGCGCCATT TCCGCACTGC AGAGTAAAGC CAAGGACATA TTGCCCGCCG GGATCGCCGG CCATCTGGGC GGCACTGCGG CGCAATTCCA GTCCGCTTTC AAATCGTTGC CATTTTTGTT GTTGGCCACC GTACTGCTCA TTTATGTAGT GCTGGCCATT CTCTACGAGC ATTTTCTGCA TCCTCTGACC ATTCTGACCG CCTTGCCCCT GGCGGCTTTC GGAGCCTTGC TGTCATTGGT TATTTTTAAC GAGCCCCTCG AGTTGTACAG CTTCATCGGC ATCATCATGC TGCTCGGGCT GGTCAAGAAA AACGGCATCA TTCTCGTCGA TTTTGCGGTC AGTCGCCGTC GCGAAGGCGC CAGTGCCTAT GAGGCCATCG TCGATGCCTG CACAATCCGC TATCGCCCCA TCATGATGAC CACTTTTGCC GCCATCCTTG GTGTACTTCC CATTGCCATC GGCTTTGGCG CCGGCGCAGA TAGCCGGGTA CCCTTGGGCA TCGCCGTAGT CGGTGGCCTG ATATTTTCCC AGTTTTTGAC ACTTTACATT ACACCCGCTT TTTATTTATT TTTTGATGAA TTACAAGCGG CTCCCAAGTA TTTCAACTGG TTATTTGGGC GTTAA
|
Protein sequence | MNLSAPFIRR PVATTVLAVA VALLGLFAYL QLPTALLPNV SFPMVMVTAE LPGASPKTMS SAVATPLERQ FASIPGLNSM SAVSQNGVTQ ITLQFDLSKS PLGATQQVSN AVSQAQHFLP PGMPEPPSVR QMNPSAQPVF YIGMSAPNMP LYDLDKYAQT KVSTALSGIS GVSDVQIYGA QTYAVRIYVN PFALSARGLS LQAVQSALGN ANVNLPGGTL DGGDQAFATQ VHGQLHTAEA YNHLVLAYEG GQAVPLSAVG KAVNSTQDNQ QETWINKTPG IVLAVTRQPG SNTVAISNKI RAMLPQLQAA MPGGVHLTNV FDLADYIRAA VHEVLMTLIL ASILVAGVMW LFLRRPSATL IGAVAIPLSL LGTFLVMMLL GFSINTLTLL ALTLSVGFVV DDAVVMLENI NRHIDRGETG MTAALNGSRE ISFTVLSMTL SLSIIFLPLI FLGGFVGHLF SDFGVSIAVV ILISGMVALS VTPMLCSRYL KPNHAHTPTD LHDTGHLPED GIFQRFFKGS RDFYIRTLKV ALQHKYWMLA LAGLSLAGSV WLVMIVPKAF LPSQNSGMIN ANIEYPTGMT FAEVSHEQSE IARVVKSNPR IQSVVSSAGQ GPGGFGSSTS GHMFIHIRNG YAPETEEIIE DLNRATQGFH NAQVVFQGPQ SAHSGTASDN GSYVYELIGN NWTDLNAATL RMTAALRRLP QLSSVSNSLQ NNNPQVAIKI NRPWATALGV TPAAIENTLG LAFGGHEVGT IYGANDQYEV IMELEPRYQH NINALSTLSV AGAGGTLVPL SAVAEFHYDA APLTLMQHNG QPSTTISFNL APGANLGRAI SALQSKAKDI LPAGIAGHLG GTAAQFQSAF KSLPFLLLAT VLLIYVVLAI LYEHFLHPLT ILTALPLAAF GALLSLVIFN EPLELYSFIG IIMLLGLVKK NGIILVDFAV SRRREGASAY EAIVDACTIR YRPIMMTTFA AILGVLPIAI GFGAGADSRV PLGIAVVGGL IFSQFLTLYI TPAFYLFFDE LQAAPKYFNW LFGR
|
| |