| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | AFE_2072 |
|---|
| Symbol | |
|---|
| ID | 7135310 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011761 |
|---|
| Strand | - |
|---|
| Start bp | 1821488 |
|---|
| End bp | 1823656 |
|---|
| Gene Length | 2169 bp |
|---|
| Protein Length | 722 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 643530443 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002426475 |
|---|
| Protein GI | 218666338 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3170] Tfp pilus assembly protein FimV |
|---|
| TIGRFAM ID | [TIGR03504] FimV C-terminal domain
[TIGR03505] FimV N-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.813162 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGGCA TTGGTTTGCT TTTGCCGGGT ATGGCGCAGG CGCTGGGACT CGGTGAGCTG
CGGGTGCTCT CCGCGCCGGG GGAGCCCTTT CGCGCGGAGA TTCCCCTACA GTCGTTGAAC
CCCAAAGGCG AAGCGAACCT CAGCGTCGGA CTCGCGCGGG CCAGCGACTT CGCGATGATC
GATCTTCCCA GATCGGGCGC ACTGGATCAC TGGCATTTTA CGGTGCGCAG CGGTGATAGG
CCGGCGATAC TGATCAACAG TCCCTTGCCG CTCGCCCAGC CGGAATTGCA TTTCCTGGTG
CGGCTCGATT GGTCCGGAGG ACAGATGGTC CGGGAGTATA CGGCATCCGG TATCGCGAAT
AACGTGGTCC CCGCCGCCGC GCCGCCGGCG TCCGTTCCGC AGTCCATCGC CTCCCCGATA
ACGCCGCGGC CCACCCGCCA TACGGCTGCC GCACCCCTCT ATCACGGCTG GGCAAGAGTC
AGCCGTTATG GCCCGGTACC GGTCAACGGC TCTCTTTTTC AGGCCGCGCA GTCCATTGTC
AACAGTAATG CGGTCACCAT CGATCAGGTC ATGGCGGCGC TGCTGAAGGC CAACCCGCAG
GCCTTCAAGG GCGGTAATCC CGATTACCTC TATGCCGGAA CCATGTTGAC GGTGCCCAGT
CTGGCCCAGG TGCAGTCTGC TTCACCCGCA CAGGCCAGCG CCTGGTTGTC TGCCCGACAG
ACGGCGAACA AACTGTCGGT CGTTGCGGTG GCGACTGCGC CGACGGCCTC CGCTGCTGTA
ACGAGCGCGG CTCCCGTCAG CGCGCCGGCC GTTTCTGCGG CAACTGCGGT CAAACCCGCC
GGGAGCGCGA CGCATCTGGT GCTTTCCAGC GCCCCTGCCG CAGCGGTGAC CGCTCCCGTA
GCCAGCGTGG CACCCCCGGC CAGCCCGCTG CAGACGCCGG ATGCCATGCT CCGCAGGGAT
AATCAGAAGC TGACGGCGGA AGTGGCCGGC CTGGGGCAGC GTCTGAGCGC GGAGGAGCGC
CTGCTGGCCG CTCAGGGCGC GCAGCTTGCC GCCCTTTCCC GGGCGGAGGG CAACAACAGT
CTTCCGTTGA TCCTGTCGCT GGGCGGAAAT CTTTTGCTGC TCGCCCTGTT CATCTGGATG
TGGCGTCGCC AAAAAGAGGC GGAACAACGT CAGCGAGAGA TTTCCCAGCG GGTTTCCGTT
TTGAGCACTG CGCCTAAAGC GCCCGCAGCG CCACCTCAAT CCGGGGCGCC TGCCCCGGTG
GCTGCCGCTA CTGCACCAGC GCCCTTGGCG GTCGTCACTG CCGGGGGCAG CGCGGCTGCC
CAGGCCGGTG CCGCCCCGTC TGCGGATCAT GTCAGAGGCG CCGGAGTGCC CCATGCCGGT
GCCGCCGAAA TCGATCCCGT CGAACAAGCC GATCTTTACC TGACCTACGG TAAGGCGGAA
CAGGCGGTCG CCGTGCTCAA TGACGCCCTC GAAGAAAATC CGCGGCGAAA GGAGCTGTAC
GTCAAGCTGC TCGACATTTA TGCCAATCTG GATCGCCACG AGGAATATCT GGATCTCGCC
GAACGTATGC GGGGGCGTTT CGGGCCGCAC AATGGGGCGT GGCAGGAAGT GGCCGCACAA
GGGGCGCGAC TCTTTCCCGG TAACGCGCTC TTCGCCATCT CCGACGAGGG GGCGGTGGTC
GCTTCCGCCC CGGTCGTCGG GGTAGACCAG CCTGCCCCCG GGGAGGTGTC CCCGGCGCTG
GAGCCTCTGG ATGTGCTGGA TTTCCACTTC GACCATACTC CTGCGGGGTC TGCGGCAGGA
GAAGCATTGA ACGCTTTCCC GGCGGCGGAA AAGGCCCGTC TCCTGCAGGA TATCGATGAG
CAGTTCCGGT TGATGGAGGA AGCAGGGGCG GAAACTGGGG CCCCGGGACC TCGGACAAAA
CCGGTACTGG AACTGGCACC GGACGTCTCG GTATCTGCTC CGGCGCCTGC CGGGCCTCCC
GCCGTCGGAG CGCCGTCTGG CGGTGTGGAT GTTGCGGATT GGGATGCCAT GGGCACCAAA
CTTGACCTGG CCAAAGCCTA TGTGGAGATG GGTGACGGTG AATCGGCACG CGATCTGCTC
GAAGAACTGA TCCGGGAAGA CAGCGGCGCC CATCGGGAAG AAGCCCGGCA GTTGTTGGGA
AGTCTTTAA
|
|---|
| Protein sequence | MAGIGLLLPG MAQALGLGEL RVLSAPGEPF RAEIPLQSLN PKGEANLSVG LARASDFAMI
DLPRSGALDH WHFTVRSGDR PAILINSPLP LAQPELHFLV RLDWSGGQMV REYTASGIAN
NVVPAAAPPA SVPQSIASPI TPRPTRHTAA APLYHGWARV SRYGPVPVNG SLFQAAQSIV
NSNAVTIDQV MAALLKANPQ AFKGGNPDYL YAGTMLTVPS LAQVQSASPA QASAWLSARQ
TANKLSVVAV ATAPTASAAV TSAAPVSAPA VSAATAVKPA GSATHLVLSS APAAAVTAPV
ASVAPPASPL QTPDAMLRRD NQKLTAEVAG LGQRLSAEER LLAAQGAQLA ALSRAEGNNS
LPLILSLGGN LLLLALFIWM WRRQKEAEQR QREISQRVSV LSTAPKAPAA PPQSGAPAPV
AAATAPAPLA VVTAGGSAAA QAGAAPSADH VRGAGVPHAG AAEIDPVEQA DLYLTYGKAE
QAVAVLNDAL EENPRRKELY VKLLDIYANL DRHEEYLDLA ERMRGRFGPH NGAWQEVAAQ
GARLFPGNAL FAISDEGAVV ASAPVVGVDQ PAPGEVSPAL EPLDVLDFHF DHTPAGSAAG
EALNAFPAAE KARLLQDIDE QFRLMEEAGA ETGAPGPRTK PVLELAPDVS VSAPAPAGPP
AVGAPSGGVD VADWDAMGTK LDLAKAYVEM GDGESARDLL EELIREDSGA HREEARQLLG
SL
|
|---|
| |