| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | AFE_2068 |
|---|
| Symbol | trpA |
|---|
| ID | 7137039 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011761 |
|---|
| Strand | - |
|---|
| Start bp | 1817963 |
|---|
| End bp | 1818781 |
|---|
| Gene Length | 819 bp |
|---|
| Protein Length | 272 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 643530439 |
|---|
| Product | tryptophan synthase subunit alpha |
|---|
| Protein accession | YP_002426471 |
|---|
| Protein GI | 218667802 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0159] Tryptophan synthase alpha chain |
|---|
| TIGRFAM ID | [TIGR00262] tryptophan synthase, alpha subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.659301 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCGTC TCGCCGGGCT GTTTGTCCAA CTCCGGGATG CGGGTCGCGC CGCCCTCATT
CCTTTCATGA CGGCGGGTGA CCCATCCCTG ACCGCGACCG TGCCCCTGAT GCACGCGCTG
GTCGCCGCGG GGGCCGATGC CATCGAACTG GGGATGCCCT TTTCCGACCC CATGGCCGAT
GGTCCCAGCA TCCAGCGCGC CAGTGAGCGG GCGCTGGCGC GAGGGGTGAA GCTGCGCATG
GTCCTGGAGT GGGTGCGCGA ATTCCGCACG ACCAACAGTC ACACGCCCGT CATTCTCATG
GGTTATCTGA ATCCGGTGGA AGCCATGGGT ATAACCTCGT TCGCCGAGGC TGCCGCGACG
GCGGGGGTGG ACGGTGTCAT TCTGGTGGAT CTGACTCCGG AGGAGGGGCG AGGTGAAGCC
GTCGTTCTCC GCCAGCGGGG TATCGATCCC ATTTTCCTGC TGGCGCCGAC CAGCGGGCCG
GAACGCGTGG CGACCGTCCG CAGTATGGGC AGTGGTTTTG TATATTATGT ATCTCTGCGC
GGTATTACCG GTGCAGCCCA GGCGGACTGG GCGGAAGTTC TGGAGCGGGT ACAGCACCTG
CACCGGCAAC TGGGCCTGCC CGTGGCCATC GGTTTTGGCA TTCGCGATGC AGCGACGGTA
GCGCGGGTGG CGACCGGGGC CGACGCGGTG GTCGTCGGCA GTGCACTGGT CGATCAACTG
GCGGCGTGTG CGACGGATCA GGAAGCCATT GCGGCGGCCA TCCGCTTTGT CGAGCCGCTG
GCCCAGGCCG TCCGGAGTAC GGAAAGGAGA GGCGCATGA
|
|---|
| Protein sequence | MSRLAGLFVQ LRDAGRAALI PFMTAGDPSL TATVPLMHAL VAAGADAIEL GMPFSDPMAD
GPSIQRASER ALARGVKLRM VLEWVREFRT TNSHTPVILM GYLNPVEAMG ITSFAEAAAT
AGVDGVILVD LTPEEGRGEA VVLRQRGIDP IFLLAPTSGP ERVATVRSMG SGFVYYVSLR
GITGAAQADW AEVLERVQHL HRQLGLPVAI GFGIRDAATV ARVATGADAV VVGSALVDQL
AACATDQEAI AAAIRFVEPL AQAVRSTERR GA
|
|---|
| |