Gene AFE_2056 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAFE_2056 
SymbolsecF 
ID7135851 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidithiobacillus ferrooxidans ATCC 23270 
KingdomBacteria 
Replicon accessionNC_011761 
Strand- 
Start bp1805316 
End bp1806329 
Gene Length1014 bp 
Protein Length337 aa 
Translation table11 
GC content58% 
IMG OID643530427 
Productprotein-export membrane protein SecF 
Protein accessionYP_002426459 
Protein GI218667144 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0341] Preprotein translocase subunit SecF 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR00966] protein-export membrane protein SecF 


Plasmid Coverage information

Num covering plasmid clones5 
Plasmid unclonability p-value0.880378 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGGCATCAT CGAACTCGCC CTCGGCAAGC GGCGCGTGCA AAAGCTTTAT ATCTGAGGTC 
GCGATGGAAC TTTTCAAAGT CCGTACCCAT GTAGACTTCA TGTCCAGACG CTGGATTTTT 
CTGGGCGTGT CCGCTCTGCT GATCATCGCC TCCGTCGCCG TTTTTCTGGT GCGGGGGCTG 
AATTACAGCA TCGATTTCAC CGGTGGTACG CTGGTGGAAC TGGCATTCAG CAAGACGCCG 
GATCTGGGCG CGGTGCGGGG TACCCTCACC CAGGCGGGCT TCCACGATGC GGTAGTGCAG 
ACCTTTGGTG GTGACCGCGA CCTGCTGATT CGCCTGCGCA CCGTACCCGG TGAGAGCAGC 
GCCGTGGGCA ATACGATTCT GCAGGTATTC CGGAAGGATC AAGTGGAGTA TCCCGATGTG 
CAGTTGCGCC GCACCGAATA TGTTGGTCCG GAGGTGGGTA AGGAATTGCG GAACAAGGGG 
ATCATGGCGC TGATCATCGT CACTCTGGGT ATTCTGATTT ATGTGGGGTT TCGCTTTGAG 
TGGCGTTTCG CCGTGGGCGG TGTGCTCGCC ATGCTCCACG ACCCGATCCT GGTGGTGGGC 
TTTTTCGCCA TCAGCCACGA AGAGTTTTCC CTGACCGTGA TTGCGGCGTT GCTGGTGATC 
ATGGGCTATT CCCTCAATGA TACGGTGGTG GTTTTCGACC GTATGCGCGA GGATCTGCGG 
GCGTCCCGCA GCGGTGATGT GGCGCAGATA TTCAACGTCG CCATCAACGA GACGCTATCC 
AGAACGGTGA TCACCAGCTT CATCACCTTC ATGGTCGCGC TTTCGCTCTT CCTTTTTGGT 
GGGCCGGTGA TTCACGGGTT TGCCACGGCG CTGGTCATCG GCGTGGTGGT GGGTACCTAT 
TCCTCGATTT TCGTCGCGAG CCCGATCGCA CTGTGGCTGG GGCTCAAGCG GGAGCACGTC 
CTCAAACGTC AGTTCATCAG TGCCAAGGAT CGTAACGACG GTGCGGCCTT GTAG
 
Protein sequence
MASSNSPSAS GACKSFISEV AMELFKVRTH VDFMSRRWIF LGVSALLIIA SVAVFLVRGL 
NYSIDFTGGT LVELAFSKTP DLGAVRGTLT QAGFHDAVVQ TFGGDRDLLI RLRTVPGESS 
AVGNTILQVF RKDQVEYPDV QLRRTEYVGP EVGKELRNKG IMALIIVTLG ILIYVGFRFE 
WRFAVGGVLA MLHDPILVVG FFAISHEEFS LTVIAALLVI MGYSLNDTVV VFDRMREDLR 
ASRSGDVAQI FNVAINETLS RTVITSFITF MVALSLFLFG GPVIHGFATA LVIGVVVGTY 
SSIFVASPIA LWLGLKREHV LKRQFISAKD RNDGAAL