| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | AFE_1997 |
|---|
| Symbol | |
|---|
| ID | 7135899 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011761 |
|---|
| Strand | - |
|---|
| Start bp | 1752620 |
|---|
| End bp | 1753333 |
|---|
| Gene Length | 714 bp |
|---|
| Protein Length | 237 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 643530369 |
|---|
| Product | autoinducer-binding transcriptional regulator, LuxR family |
|---|
| Protein accession | YP_002426403 |
|---|
| Protein GI | 218665417 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.448669 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGGATCCTT GGAAGGAAGA TCTCCTGCAG ACATTCCAGT CCATCGAATG CGAACGGCAG
GTGCTGGCGA TGGCGTCCGA AATGGCGCGT AAGCTGGAAT TCGATTACTG CGCCTATGGC
TTACGCATGC CGCTTCCGCT TGTGCGTCCC AAAACCGTCC TGTTCAGCAA CTACCCTGCG
GTCTGGCAGG CCAGATATCA AGCGCAGGAA TACCAGGCCA TCGATCCCAC GGTACGGCAC
GCCATGCGTT CGCCGTCTCC CGTCGTCTGG TCCGATGACT TGTTTGCGCC TGCACGCGAA
CTGTGGGAAG AGGCCCGTTC ATTTGGGCTG CGGGCCGGGT TGGCCCACAC CTGCCGCGAC
GCCGGGGGGA TGGGCGGCAT GTTGACCTTG GCGCGTGCTG GAGAAACCGT GACCACGGCA
GAATGGCAAG CAAAGGCCTG CCATATCCTG TGGTTGGTCC AAGCTGTCCA TCTCAGCATG
ATCCGCGTTA TCGCGCCCAA ACTCCAGCCG GAGATCGCCG TACAGTTATC TTGCCGGGAG
GTGGAAGTGC TGCGCTGGAC CGGCGAGGGC AAGACCTCCG GTGAAATCGC CAATATCCTT
AATATTACGG AGCGCACGGT CAATTTTCAC ATCAGCAAGG CCATGGCCAA GCTGAACGCC
GTCAACAAGA CCGCCGCCGT ATTGCAGGCG GCGATGCTCG GGTTGCTGTC GTGA
|
|---|
| Protein sequence | MDPWKEDLLQ TFQSIECERQ VLAMASEMAR KLEFDYCAYG LRMPLPLVRP KTVLFSNYPA
VWQARYQAQE YQAIDPTVRH AMRSPSPVVW SDDLFAPARE LWEEARSFGL RAGLAHTCRD
AGGMGGMLTL ARAGETVTTA EWQAKACHIL WLVQAVHLSM IRVIAPKLQP EIAVQLSCRE
VEVLRWTGEG KTSGEIANIL NITERTVNFH ISKAMAKLNA VNKTAAVLQA AMLGLLS
|
|---|
| |