Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | AFE_1933 |
Symbol | ispG |
ID | 7134993 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
Kingdom | Bacteria |
Replicon accession | NC_011761 |
Strand | + |
Start bp | 1684356 |
End bp | 1685456 |
Gene Length | 1101 bp |
Protein Length | 366 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 643530306 |
Product | 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase |
Protein accession | YP_002426342 |
Protein GI | 218666696 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis |
TIGRFAM ID | [TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.706847 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCACCATG AATCTCCCAT TCGGCGTCGT AAGACCCGGC AAATTCACGT TGGCAAGGTA GCGATCGGCG GCGATGCACC GATCAGCGTG CAAAGCATGA CCAACACCGA GACCCGCGAT ATCGCGGCCA CCGTCGCGCA AATCCGGCGC CTGGAGGCGG TAGGTGCCGA CATCGTCCGG ATCTCCGTAC CCAGCATGGA TGCTGCGGAG GCATTCAAGA CGATCCGCGC TCAGGTGGAA ACCCCACTAG TCGCCGACAT CCACTTCGAT CACCGCATCG CTTTGCAGGT GATGGAAGAT GGTGTCGATG GCCTGCGTAT CAATCCCGGA AATATCGGCT CTCTGGACAA AACACGGCTG GTGGTGGAAA TGGCCAAGGA CAAGGGGATC CCCATCCGTA TCGGCGTCAA CGCAGGGTCG CTGGAGAAGG ATATCCAGGA GAAATATGGG GAGCCGACGC CGGAGGCACT GGTGGAGTCT GCCTTGCGTC ATGTGAGCAT TCTGGACGAG TTGAACTTTC ATGATGTGAA GATCAGTGTC AAGGCCTCCG ACATTTTTCT CGCTGTGAGC GCTTACCGCC TGCTCTCGGA AAAGGTGGAT TACCCGCTGC ATCTCGGTAT CACCGAAGCC GGCGGCCTGC GCTCCGGCAC TGTCAAATCC GCTATCGGGC TCGGCCTGCT CCTGCGGGAT GGGATCGGCG ATACCATCCG GGTTTCGCTC GCAGCGGATC CCGTCGAGGA GATTCGTGTC GGCTTCGATA TCCTGAAAAG TCTGCACCTG CGTCAGAAGG GGATCAATCT GATCGCCTGC CCGTCCTGCT CTCGTCAGGA GTTTGATGTC ATCACCACCA TCAATGCCCT GGAAGCGCGT CTGGAAGACA TCCTCGAGCC CATGGACGTT TCGGTGATCG GCTGCGTGGT GAACGGCATC GGCGAGGCAA AGGAGGCCGA TATCGGTCTG GCGGGCGGTG ACAAGCGCAG CATTCTCTAC TACCGCGGCA AACAGGTCGA CCGGGTGGAG AACAACGATA TTGTCGACGT GCTCGAAAAG CGGATTCGTG CGGAAATCGC TGAACGGCAG GCGACGCGCC ATGAGGGTTG A
|
Protein sequence | MHHESPIRRR KTRQIHVGKV AIGGDAPISV QSMTNTETRD IAATVAQIRR LEAVGADIVR ISVPSMDAAE AFKTIRAQVE TPLVADIHFD HRIALQVMED GVDGLRINPG NIGSLDKTRL VVEMAKDKGI PIRIGVNAGS LEKDIQEKYG EPTPEALVES ALRHVSILDE LNFHDVKISV KASDIFLAVS AYRLLSEKVD YPLHLGITEA GGLRSGTVKS AIGLGLLLRD GIGDTIRVSL AADPVEEIRV GFDILKSLHL RQKGINLIAC PSCSRQEFDV ITTINALEAR LEDILEPMDV SVIGCVVNGI GEAKEADIGL AGGDKRSILY YRGKQVDRVE NNDIVDVLEK RIRAEIAERQ ATRHEG
|
| |