| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | AFE_1891 |
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| Symbol | vacB |
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| ID | 7136020 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011761 |
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| Strand | + |
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| Start bp | 1649232 |
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| End bp | 1651472 |
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| Gene Length | 2241 bp |
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| Protein Length | 746 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 643530267 |
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| Product | ribonuclease R |
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| Protein accession | YP_002426304 |
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| Protein GI | 218667199 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCGGAAA CACAAGAACC CTCGTCGCTG AGTGACCGCG ATCCCATGTT CGACCGGGAA
AAGGAAAAAT ATGAGCGACC CATCGTCAGC CGGGAGTACA TTCTCAGCTA TCTGGAAAGT
GCCGGTCAGC CATCGACTCT GGAGGATATC ATCGCCGATC TGGAAGTGTC CGAAGAGGAC
CAGGAAGCCC TGCGGCGGCG TCTGCGGGCC ATGGAACGGG ATGGGCAATT GGTTCGTAAC
CGTCGCGGCG CTTACGGAAT CGTTGAGGCG ATGGAGTTGG TGCGCGGTAC GGTCAGTGCT
CACCCCGATG GCTTTGGTTT TCTGATCCCG GAGGGAGGTG GGAAGGATCT TTTCCTTTCC
CCGCGGGAAA TGCGCAAGGT ATTTCACGGT GATACGATTC TGGGCCGAGC GGTCGGAGAG
GACCGGCGCG GCCGTATCGA AGGCGCGATC GTGCGTATTC TGGAACGCGC GCTCAAACAG
GTTGTGGGGC GTTACTACGC GGAAGGTGGG GTGCGCTACG TCGTCCCCGA AGATCGTCGC
ATTCCCCAGG AATTTGCGGT GGTGGAAGGG GGTGAGCTGG CACCCGTACA CGGACAGATC
GTGACGCTGG AAATCACTCA GTACCCGGAT GGGCGCAATA TGCCCCAGGG CTGCGTGGTC
GAGATTCTGG GTGAGCACAT GGCCCCGGGC ATGGAAGTGG AAATCGCCGT CCGTAACTAT
GGCTTGCCCC ATCAATGGCC GGACGAAGTG CTTGCGGAAA TTACGCATTT CTCCGAGACC
GTCCCGGAAG CGATCAAGGA AGGGCGCCGC GATCTGCGCG CGCTTCCCCT GGTGACCATC
GATGGCGCCG ATGCCAAGGA TTTCGATGAT GCCGTCTATG CTGAAGAGAT CGAAAACGGC
TTCCGACTGA TCGTTGCGAT CGCTGACGTG GCCACTTATG TACGACCGGA CTCTGCGCTG
GACAAAGAGG CCGCGACTCG TGGTAATTCT GTCTATTTCC CGCGGCGGGT GATTCCCATG
CTGCCCGAGA TACTGTCCAA CGGACTTTGC TCCCTCAATC CCCATGTGGA CCGCCTCTGC
ATGCTTTGTG AGATGGAGAC GGATCTGACC GGTGAGGTGC AGCGTTTCCG CTTTGCCCGG
GGTGTCATGC GCTCCCAGCG CCGCTTCACC TATGACGAAG TGGCCGCCAT ATTGGCGGGT
GATGAGGATT TGCGTACACG TGATGCAGCC ATGGTTCCGC ATCTGGAGGT GCTGCACCGA
CTTTATGAAA GTTTTGCCAA GGCCCGTGAG CGGCGGGGCA CCATCGAGTT CGATTCGCAA
GAAAGCCGCA TTATCTACAA TGAACAGGCG CGCATTGAAA AGATCGTCGC AGTGACGCGC
AACGTAGCCC ACCGGATCAT CGAAGAGTGT ATGCTCGCGG CCAACGTGTG TGCAGCGCAA
TATTTCCGTA TCCACGAACT GCCCATGCTA TATCGGGTGC ATCCGGAGCC ATCCGGCGAC
AAGCTGGAAG ATTTGCGCCG CTTTCTGGGG GAGCTCGGTG TGCCGGTGCG TCTGCCTACC
CACCCCCGCA GCGCCGATCT GGCCAGCATC ATTGAGGACA CTCGTGAGCG CAGTGATTCC
AGTCTGATCC AGACGGTTAT TCTGCGCAGC CTTTCGCAGG CCTATTATAC CGTGGATACG
GGCATGCATT TTGGTCTGGC CTTCCTGGCC TACACGCACT TTACCTCTCC CATCCGTCGT
TATCCGGACC TCGTCGTGCA TCGTGGCATT CAGGCTTTGC TGGACGCAGC CGGCGCGGAA
CCTCGGTGGT TCCCCCAAAA GGTATTGCAG GAGCTTGGTC AGCACTGCTC CATGACCGAG
CGGCGGGCTG ACGAAGCCAG TCGCGAGGCG GTGAATTGGC TCAAGTGCGA ATTCATGATG
GATAAGGTAG GCGAGACCTA TACTGGCATC ATTACGGGCG TTACCGGGTT TGGTCTCTTT
GTGGCACTGC GGGAGATCTA CGTGGAGGGT CTGATCCATA TCAGTACCCT CGGTGAAGAC
TACTTTCACT TCGATGCTCA GCATTACCGG ATTATTGGTG ACCGGACCAA GGAAACATTC
CAACTGGGAG ACGAAATCCA GATCAGGGTT GCGAACGTCA ATCTGGATGA TCGTAAGATT
GATTTCGAGC GGGTAATGCC GGAGGGGCAA AGTGGCGCGG CGAAGAACCG GCGGAATCGG
CGCAGCAGGA AAGACGCATA A
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| Protein sequence | MPETQEPSSL SDRDPMFDRE KEKYERPIVS REYILSYLES AGQPSTLEDI IADLEVSEED
QEALRRRLRA MERDGQLVRN RRGAYGIVEA MELVRGTVSA HPDGFGFLIP EGGGKDLFLS
PREMRKVFHG DTILGRAVGE DRRGRIEGAI VRILERALKQ VVGRYYAEGG VRYVVPEDRR
IPQEFAVVEG GELAPVHGQI VTLEITQYPD GRNMPQGCVV EILGEHMAPG MEVEIAVRNY
GLPHQWPDEV LAEITHFSET VPEAIKEGRR DLRALPLVTI DGADAKDFDD AVYAEEIENG
FRLIVAIADV ATYVRPDSAL DKEAATRGNS VYFPRRVIPM LPEILSNGLC SLNPHVDRLC
MLCEMETDLT GEVQRFRFAR GVMRSQRRFT YDEVAAILAG DEDLRTRDAA MVPHLEVLHR
LYESFAKARE RRGTIEFDSQ ESRIIYNEQA RIEKIVAVTR NVAHRIIEEC MLAANVCAAQ
YFRIHELPML YRVHPEPSGD KLEDLRRFLG ELGVPVRLPT HPRSADLASI IEDTRERSDS
SLIQTVILRS LSQAYYTVDT GMHFGLAFLA YTHFTSPIRR YPDLVVHRGI QALLDAAGAE
PRWFPQKVLQ ELGQHCSMTE RRADEASREA VNWLKCEFMM DKVGETYTGI ITGVTGFGLF
VALREIYVEG LIHISTLGED YFHFDAQHYR IIGDRTKETF QLGDEIQIRV ANVNLDDRKI
DFERVMPEGQ SGAAKNRRNR RSRKDA
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