| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | AFE_1819 |
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| Symbol | dapE |
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| ID | 7135772 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011761 |
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| Strand | - |
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| Start bp | 1584324 |
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| End bp | 1585472 |
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| Gene Length | 1149 bp |
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| Protein Length | 382 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 643530198 |
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| Product | succinyl-diaminopimelate desuccinylase |
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| Protein accession | YP_002426237 |
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| Protein GI | 218667059 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
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| TIGRFAM ID | [TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.578155 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | GTGGGCAAGA GCGCCGTACT GGAACTGGCT GAAGACCTGA TTTCCCGCCC TTCGGTGACC
CCGGAGGATG CAGGCTGTCA GGAACTGATG ATCGCCCGGC TGAAGGCTGT GGGTTTTCGG
GTGACGCGTC TGCCTGCCAA CGGGGTGGAG AATTTCTGGG CGGAGCGGGG TGGCGCCGGC
CCGCGACTTT GTTTTGCGGG GCATACGGAT GTAGTCCCCA GCGGCCCGCT CGCGGAATGG
CAAAACGACC CCTTTCAGCC GATCATCCGC GACGGCATGC TCTATGGACG TGGTGCTGCC
GACATGAAGG GCAGCCTCGC CGCCATGGTG GTCGCCGCAG AGCGTTTTGT CGCCCTGCAT
CCGGCGCATT CCGGTCGTCT GGCCTTTCTG ATCACCTCCG ATGAAGAAGG CATCGCCACC
CACGGTACCC GCCATGTGGT GGACTGGCTG CGGGAGCATG GGGAGACCAT CGACTGGTGC
GTGGTCGGCG AGCCCTCCTC CGAAAAGGTG TTGGGGGACG TCATCAAAAA TGGTCGGCGC
GGTTCGCTGA ACGGGCGCCT GACGGTACAC GGCATCCAGG GCCATGTGGC TTACCCTGAC
AAGGCCGATA ATCCCATCCA CCGCGCCTTC CGCCCACTCG CGGATCTCGT GGATCAGTCC
TGGGATGCGG GGAATGATTT TTTCCCGCCT ACCCGCCTGC AGTTCTCCAA TATCCACGCG
GGCACCGGGG CCAACAACGT CATTCCCGGC CAGTTGCAGG CGGATTTTAA TTTTCGTTTT
TCCACGGAGT CCACGCCGGA ATCTTTGCAG GCAGGGGTCC ACAAAATCCT TGACGCCTCC
GCCATGCGCT ACACCATCGA CTGGCAATTG TCCGGTCCGC CTTTCTTTAC GGCACCGGGC
CCCTTGGTAG CTGCTACCCA AAAGGCCTTG CAAGCCGTGG AACAGCGCGT GGCCCAACTG
TCCACCGGCG GTGGCACCTC GGACGGGCGC TTCATTGCCC AGTTGGGCGG GCAAGTCGTA
GAACTCGGGC CCGTCAATGC CACCATCCAC AAGATCAACG AATGCGTTGC CGTCGCCGAT
CTGGAGCATC TGGCGCAAAT CTATATGGAG ATCATGGTGC ATCTGCTGGA GACCGCGAAT
GGCCGTTAG
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| Protein sequence | MGKSAVLELA EDLISRPSVT PEDAGCQELM IARLKAVGFR VTRLPANGVE NFWAERGGAG
PRLCFAGHTD VVPSGPLAEW QNDPFQPIIR DGMLYGRGAA DMKGSLAAMV VAAERFVALH
PAHSGRLAFL ITSDEEGIAT HGTRHVVDWL REHGETIDWC VVGEPSSEKV LGDVIKNGRR
GSLNGRLTVH GIQGHVAYPD KADNPIHRAF RPLADLVDQS WDAGNDFFPP TRLQFSNIHA
GTGANNVIPG QLQADFNFRF STESTPESLQ AGVHKILDAS AMRYTIDWQL SGPPFFTAPG
PLVAATQKAL QAVEQRVAQL STGGGTSDGR FIAQLGGQVV ELGPVNATIH KINECVAVAD
LEHLAQIYME IMVHLLETAN GR
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