| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | AFE_1527 |
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| Symbol | nifA |
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| ID | 7135963 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011761 |
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| Strand | + |
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| Start bp | 1323925 |
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| End bp | 1325562 |
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| Gene Length | 1638 bp |
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| Protein Length | 545 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 643529914 |
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| Product | Nif-specific regulatory protein |
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| Protein accession | YP_002425954 |
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| Protein GI | 218665550 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
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| TIGRFAM ID | [TIGR01817] Nif-specific regulatory protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAGATC GCGTAACACC CAACCATTTT CAGGAGCTGA CGACCATCTA TGAGGTGAGT
AAGGTGCTCA GCTCTTCCAT GGATCTTGAA CACACTCTGA ACGATGTTCT GAAGACGCTG
GAGAGCCATC TGCATATCTC ACCGTCCATG ATCGTATTGC GCATGAACGA GGAAATAGTG
GGGGTAATCG CGGCCACGGG GTTGTCCGTT GCGGAAATAG AACGGGGGCG TTATCGGTTG
GGGGAGGGGA TGATTGGCAA GATCATGCGT GCCGGCATGC CGATAGTGAT TCCTGATGTC
TCTCAGGAAC CGGCTTTTCT GCACCGCGCC TTTGAACCGG AGATCAGTCA GCGCTTGCAT
GCTTTTGTAG GGGTGCCGAT CAAGGTGGGA TATGAGTGTA TCGGTGTGCT CGCCATCTAT
CGCAGTGAGC GACACAAAGG CGTGAGTTTC CGTTCCGATG TCCGCTTGTT GCAGATGATC
GCCAATCTGG TGGGACAGAC CGTTAATCTG CATCAGGGTA TCTCCGCGGA ACGAAACCGC
CTTTTGCAGG AAAAGCATCG TCTGCAGAAG GAGTTACAGA AACGATACAG CATCAAGAAT
GTCATCGGCA ACAGCCGGGC CATGCAGGCG GTATTCGCCG ATGTGCATCA GGCGGCACCG
GGCAAGGCGA CGGTGTTGCT GCGCGGTGAA TCCGGCACCG GGAAGGAAGT CATCGCCCGC
GCCATTCATT ATCTCAGCCC CCGTCGCGAC AAAGCCTTTG TTTCGCTCAA TTGCGCGGCG
CTCCCGGAAA GCATTCTCGA GTCAGAACTC TTCGGACATG AGCGCGGCGC GTTTACCGGC
GCCACCCAGG AGCGCAAAGG GCGCTTTGAA CTGGCAGATG GCGGCACGCT GTTTCTCGAC
GAGATCGGCG ACATCTCTCC GGCTTTTCAG GCGAAGCTCT TACGGGTGCT GCAGGAGCGT
GAATTCGAGC GGGTAGGCGG AACGCAGACC CGGCGGGTCA ATGTGCGCAT TATCGCAGCC
ACCAATCGCA ACCTCGAAGA GGCGGTGAGC AAGGGCGAGT TCCGCGCCGA TCTGTACTAT
CGGATCAATG TCGTCAGTAT TTTTCTGCCC CCACTGCGGG AGCGTCGCGA GGATATCCCC
GCCTTGATCG AACATTTCCT CGCCCGTTAC AACGCCGAGA ATCAGCGCAA ACTGACCCTC
ACCCCGGAAG CCTTGCAAAC CATGGTGTCC TGCTACTGGC CAGGTAACGT GCGGGAATTG
GAAAACTGCG TCGAACGTAC CGCCACCATG ATGCGCGGCG ATATCATCCG CAATCTGGAC
GTGCCCTGTC AGCGCAATCA GTGCCTGTCC ATGGCCTTGC GGCCGCTGGA AGGGAGTCAT
CCCATCGTCA CCATGAAGCT GTCGAGCGGC ATGAGTGTTC CGCCTCATGC AGCGCCTGAT
GTGGAGGGGC AAGTGACGGA TGCATCCGGG GCTGGTGATG GGGAAGGTTC CTTGCCTTTG
TCGGAGCGGG ATCGCCTGAT CCAGGCCATG GACCGCTGTG GCTGGGTACA AGCCAAAGCC
GCCCGTTTAT TGGGGACGAC CACCCGCAAA CTCGGTTATG CCCTCAATAA GCATGGCATA
GAAGTTAAAA AACTCTAA
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| Protein sequence | MKDRVTPNHF QELTTIYEVS KVLSSSMDLE HTLNDVLKTL ESHLHISPSM IVLRMNEEIV
GVIAATGLSV AEIERGRYRL GEGMIGKIMR AGMPIVIPDV SQEPAFLHRA FEPEISQRLH
AFVGVPIKVG YECIGVLAIY RSERHKGVSF RSDVRLLQMI ANLVGQTVNL HQGISAERNR
LLQEKHRLQK ELQKRYSIKN VIGNSRAMQA VFADVHQAAP GKATVLLRGE SGTGKEVIAR
AIHYLSPRRD KAFVSLNCAA LPESILESEL FGHERGAFTG ATQERKGRFE LADGGTLFLD
EIGDISPAFQ AKLLRVLQER EFERVGGTQT RRVNVRIIAA TNRNLEEAVS KGEFRADLYY
RINVVSIFLP PLRERREDIP ALIEHFLARY NAENQRKLTL TPEALQTMVS CYWPGNVREL
ENCVERTATM MRGDIIRNLD VPCQRNQCLS MALRPLEGSH PIVTMKLSSG MSVPPHAAPD
VEGQVTDASG AGDGEGSLPL SERDRLIQAM DRCGWVQAKA ARLLGTTTRK LGYALNKHGI
EVKKL
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