Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | AFE_1461 |
Symbol | dnaE |
ID | 7135551 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
Kingdom | Bacteria |
Replicon accession | NC_011761 |
Strand | + |
Start bp | 1262301 |
End bp | 1265801 |
Gene Length | 3501 bp |
Protein Length | 1166 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 643529849 |
Product | DNA polymerase III, alpha subunit |
Protein accession | YP_002425889 |
Protein GI | 218665927 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0587] DNA polymerase III, alpha subunit |
TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGTACGC CGCAGTTCGT CCATCTGCAC GTACACTCCG AATACTCCCT GGAAGACGGA ATCATTCCGG TCAAGGCGCT GGCCAGACGC TGCGCGGAGC GAGGCATGCC GGCCGTGGCG ATCACTGATC ACGGCAACCT TTTTGCCCTG GTGAAATTTT ATAATGCTGC CCGGGGGCAG GGCGTCAAGC CATTGATTGG CAGTGAAGTC TGGGTGCATG ATGTGGCAGA ACCGGAACGA CCGGTCAGCC TTGTCCTGCT GTGCATGGAC AAAACCGGTT ACCGTAACCT CAGCCGCCTG CTCAGCCGGG CTTACCTGGA GGGCAGTCGC CACGGTCGTC CGCAGATCGA CGTGGCATGG CTGGAAGGGT CGAGCGACGG TCTCATTGCC CTGTCTGCGG CAGGGCAGGG GGAGATCGGG CGTGCCCTGC AGCGCCATCC GCAACAGGCG GAAAGCCGGG CGCGATACTA CGCAAGGCTT TTCCCGGAGC GTTTTTATCT GGAGGTGCAG CGCAACGGTG AGGCGGAACA GGAGGCCCTG GTCCAGGCCA CGGTGGCGCT GGCGGAAAAA CTGGATTTAC CGCTGGTGGC CACCAATAAC GCCCACTTTC TCGATGCGGC GGACTTTGCG GCTTTCGACG CGCGACAGTG TATTTCTGCG GGCTTTACCC TGGACGACCC GCGCCGTCCA CGGCGTTTTA CGCCGGAGCA CCGCCTGCCG GACCCCGAAG AAATGCGAGA GCGTTTTGCG GACCTGCCGG AAGCTTGCGA CAATACCGTC GAAATTGCGC GACGCTGTAA TATGGAGCTG GTGCTTGGGC ATTATGCGCT ACCGGACTAC CCCATTCCCG CCAACCAGTC CGTGGATGAA TATTTGCACG ACGCGGCGCA AAAAGGTCTG CAGGAACGCT TGCAGGAGCT GCGTATCACC GGCGACGCCA CGCTGCCTTA TCACGAGCGC CTGTTGCGTG AGGTCGGCGT CATTCAGCAG ATGGGCTTCC CCGGTTATTT TCTCATCGTC GCGGATTTCA TCCAGTGGGC AAAAAATAAT GGCGTGCCGG TAGGACCTGG TCGTGGTTCC GGCGCCGGAT CGCTGGTGGC CTACGCACTA CGGATCACCG ATCTCGATCC CATCGGCAAT GGCCTGTTGT TCGAGCGCTT TCTCAATCCC GAACGCGTTT CCATGCCTGA CTTCGACGTG GATTTCTGCA TGGATCAGCG TGACCGCGTC ATTCAGTATG TGGCCGACAA ATACGGTCGT GACCGGGTCG GCCAGATCAT CACCTTTGGG ACGATGAAGG CGCGGGCGGT GGTGCGTGAT GTCGGCCGGG TGCTGGGTCT ACCGTATGGC TTTGTCGACC AGTTGGCCAA GCTGGTGCCG GGTGATCTGG GAATGACCCT GGCGAAGGCC CTGGAGGAAT CGGAGGAACT GCGGCGACGC CAGGCTGAGG AAGACGACGT CCGCGACCTG CTGGACATCG CCTTGCGCCT GGAGGGTTTG CCCCGTCACG CCTCGACCCA TGCGGGTGGC GTGGTGATCT CCCCGGAGCC ACTGGCCGAC CGCCTGCCGC TCTTTAACGA CGGCTCTGAA GGGGGGGGTA ACGTCACCCA GCTCGATAAG GACGATGTAG AAAAGATGGG GTTGGTGAAG TTCGACTTTC TCGGCCTGCG TACCCTGACC ATCATCGATA TGGCGGTCAA GCTCATCAAT GCCGATGCGG CAGCGGCGGG TCGTGCGCCC GTGGATATTC AGCAATTGCC TTTGGACGAT GCGGCGACTT TCGCCCTGCT CAAGTCCACC GAGACGGCGG CGGTCTTCCA ACTGGAATCA TCGGGTATGC GCGATCTGGT GCGGCGCCTG CAGCCGGATA CTTTTGAAGA TATCGTCGCC CTCGTCGCCC TGTTTCGGCC GGGGCCGCTA CAGTCGGGTA TGGTGGATGA TTTCATCGCC CGCAAACACG GCAAGGCGCA GGTAACCTAT CTGCATCCGG ATCTGGCACC GATTCTCCGG GAAACCTATG GGGTGATTGT CTATCAGGAA CAGGTCATGC AGTCCGCCCA GGCGCTGGCG GGTTATTCCC TCGGCGGTGC CGATTTACTG CGGCGCGCCA TGGGCAAGAA AAAGCCGGAG GAAATGGCCA AGCAACGCAG CATTTTCCTG GAGGGAGCCC ACAAGAACGG TTTGGCCGCG GACCAGGCCG GGGCCATCTT CGACCTCATG GAAAAGTTTG CGGAATATGG CTTTAACAAA TCCCACTCGG CAGCCTATGC CCTGGTGTCC TACCAAACCG CTTATCTGAA GGCCCACTAT CCGCAGTTTT TTATGTCTGC CGTGCTGACC GCAGATATGG ACCACACCGA CAAAGTTGTG GCGATGATTG CCGAGTGCGC GCGCATGGGC CTGCGCATTG CTCCACCGAG CGTTCAGCAC AGTGTGCTGG AGTTCCGGCC GGAGGGGGAT GATCATATCC GCTTTGGTCT GGGTGCCATC AAGGGCTTGG GACGGGCGGC CATTCAGGCG ATTCTCGACG CCCGTAGAGG AGGCGCCTTC CTGAATCTCT TCGATCTGCT CTGCCGGGTG GATACCCAGA AAATCAATCG TCGTGCCCTG GAGGCATTGA TTCGCGCCGG AGCCATGGAT GACTGGGGCG TGTCGCGGGC CAGCCTGATC GCTTCCGTGG ACGGTTGTAT GGAAGCAGCG GCGCAGTTTC AGAGCAGTCA GGCGAGCCTG CAGGAATCAT TGTTTAGCGG ACAGGAAGCG TTGCGGGTAG CGCCGCCGCT GGTGTCTGCC GAGGCATGGA GCCTCACCGA AACCCTGCGT CAGGAACGGG AAACTCTGGG CTTCTATCTC AGTGGTCACC CCATGGACAG TCTGCGGGAT GATCTGACGG CGCTGGGAAC GATACCTCTT GGCGACGTCG CGGTCGGGTC CACGGTATTG GTGGCGGGGT TGGTGGTAGC GCGGCGCAGC ACCCGGACCA AGCGCGGTGA TCGTATCTAT TTCCTGACCC TCGACGATGG TCAGGGGCGG CTGGAGGTCG TCGTCTTTGG CGAAGTCTGG GCGCGGGCCG GCAAGATCCG AGAGGGTGAG GAGCCGGTGC TGGTTCTGGG TGAGGTGGGC GAGGACAGCT ATTCTGGCGG CCTGCGGCTC AGTGCCCTGC GTCTGCTGGA TACGGCACAG GCGCGTGAGG AATTGGCTGC CCAATTGACC TTGGATCTGG GTCTTGCCGA AGATATGGCG CCGCGAGATC TGCTTGCCGT GCTCCGTAAG TATCCTGGCC AAACGGCCTT GCGCCTGCGT TTGCGGGTCG CAGACGACGT TGTCGCGCAA TTGCGGGTGA CGGAAAACCT GAGCTTCGCG GCGAGTCCCG CCGCCATTGC CGCCCTGACG GCGTTGGCAC CCGCGGCGCA CTGGCACTGG AGCTATCGGC CGGTGACCCT TCTCGTCAAT AATGTCGTCC CCCTGGAGCG TGCACGGCAC GCGACGCGAC GCCCGGCCTG A
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Protein sequence | MRTPQFVHLH VHSEYSLEDG IIPVKALARR CAERGMPAVA ITDHGNLFAL VKFYNAARGQ GVKPLIGSEV WVHDVAEPER PVSLVLLCMD KTGYRNLSRL LSRAYLEGSR HGRPQIDVAW LEGSSDGLIA LSAAGQGEIG RALQRHPQQA ESRARYYARL FPERFYLEVQ RNGEAEQEAL VQATVALAEK LDLPLVATNN AHFLDAADFA AFDARQCISA GFTLDDPRRP RRFTPEHRLP DPEEMRERFA DLPEACDNTV EIARRCNMEL VLGHYALPDY PIPANQSVDE YLHDAAQKGL QERLQELRIT GDATLPYHER LLREVGVIQQ MGFPGYFLIV ADFIQWAKNN GVPVGPGRGS GAGSLVAYAL RITDLDPIGN GLLFERFLNP ERVSMPDFDV DFCMDQRDRV IQYVADKYGR DRVGQIITFG TMKARAVVRD VGRVLGLPYG FVDQLAKLVP GDLGMTLAKA LEESEELRRR QAEEDDVRDL LDIALRLEGL PRHASTHAGG VVISPEPLAD RLPLFNDGSE GGGNVTQLDK DDVEKMGLVK FDFLGLRTLT IIDMAVKLIN ADAAAAGRAP VDIQQLPLDD AATFALLKST ETAAVFQLES SGMRDLVRRL QPDTFEDIVA LVALFRPGPL QSGMVDDFIA RKHGKAQVTY LHPDLAPILR ETYGVIVYQE QVMQSAQALA GYSLGGADLL RRAMGKKKPE EMAKQRSIFL EGAHKNGLAA DQAGAIFDLM EKFAEYGFNK SHSAAYALVS YQTAYLKAHY PQFFMSAVLT ADMDHTDKVV AMIAECARMG LRIAPPSVQH SVLEFRPEGD DHIRFGLGAI KGLGRAAIQA ILDARRGGAF LNLFDLLCRV DTQKINRRAL EALIRAGAMD DWGVSRASLI ASVDGCMEAA AQFQSSQASL QESLFSGQEA LRVAPPLVSA EAWSLTETLR QERETLGFYL SGHPMDSLRD DLTALGTIPL GDVAVGSTVL VAGLVVARRS TRTKRGDRIY FLTLDDGQGR LEVVVFGEVW ARAGKIREGE EPVLVLGEVG EDSYSGGLRL SALRLLDTAQ AREELAAQLT LDLGLAEDMA PRDLLAVLRK YPGQTALRLR LRVADDVVAQ LRVTENLSFA ASPAAIAALT ALAPAAHWHW SYRPVTLLVN NVVPLERARH ATRRPA
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