Gene AFE_1388 details

Gene Information

• Locus tag: AFE_1388
• Symbol: cydD
• ID: 7134425
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Acidithiobacillus ferrooxidans ATCC 23270
• Kingdom: Bacteria
• Replicon accession: NC_011761
• Strand: +
• Start bp: 1201870
• End bp: 1203603
• Gene Length: 1734 bp
• Protein Length: 577 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 643529780
• Product: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD
• Protein accession: YP_002425820
• Protein GI: 218666442
• COG category: [C] Energy production and conversion; [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG4988] ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components
• TIGRFAM ID: [TIGR02857] thiol reductant ABC exporter, CydD subunit

Plasmid Coverage information

• Num covering plasmid clones: 2
• Plasmid unclonability p-value: 0.96198
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGATCAGC GGTTGATGCG GGAAGGGCGG CGCACCCGGG GTACGCTCTA TTTCGGCATC 
GGACTGGGCC TGGCGGCTGG CCTGCTGATC ATTCTCCAGG CCTTTCTGTT GGCGCACATC 
GTCGACGATG TCTCTTTTCA TGGCTGGAAT CTCGCGGCGG TGATGCCGCT GCTCTGGATC 
ATGCTCGCTC TTTTCGTCGT GCGTGCGGGG TTTTCCTGGG CGAGCGAACT GGTCGCCTTT 
CACGCCAGCG CGCGTATCAA GACCTACCTG CGCGAGCGCC TGCTTTCCCA CCTTCTGAAC 
CTGGGGCCGG TGGCCGTGGC GGGTGAGCGC AGCGCCGACA TCGCCAGCAC CATGATTGAA 
GGTGTCGAGG CGCTGGAGCC TTACTTTTCG CGTTACCTGC CGCAAATGGC CTTGGTCAGC 
CTCATACCGC TGGCCATCCT CGTGTTCGTT TTCCCCGCAG ACTGGATCAG CGGCCTGATT 
CTCCTCATCG CCGGGCCGCT CGTGCCCTTC TTCATGGTGC TGGTGGGCTA CAAGGCGGAG 
GCCATCAACC AGCGTCAGTG GCGCAAGATG CTGTTGATGA GTGCCCATTT TCTGGATATG 
GTGCAGGGCT TGACCACGCT GAAAATCTTC GGCCGCGCCA AGGACGAGAT CGAGATCGTC 
GCACGTATTT CGGATGACTA CCGGCGCACC ACCATGGCCG GGTTGCGGGT GGCCTTCCTG 
ACGTCGGCGG TGCTGGAATT TTTTGCGAGC GTGTCCATCG CTCTGGTGGC CGTATCGTTG 
GGTGCGCGTC TGCTGGAGAT CCCTCCCCCG GTCACCTTTT ATACCGCCTT CTTCGTTCTT 
TTACTGGCAC CGGAGTATTT CAACCCGCTG CGTGGCCTCG CCATCCATTA TCATGCGCGG 
ATGAGCGCCA TTGCCGCCGC CAGACGCATC TTCGATATCC TCGACACGCC GCTGCCGGCA 
CAGGGTACGC AGACGATGGC GTACCCCGAC ACCCAATCCG TCAGTCTCTC GGTGCACGAC 
CTGCATTTCT CCTATGAGGA GGGCCGGGTG GCGCTGGCGG GTGTCAATGC CGAGTTCCCG 
GCGGGCAAGG TCACTGCGCT GGTGGGCGCC AGCGGAGCGG GCAAGAGTAC CCTCGCCAAT 
GCGTTGCTCG GCTTTGTGCA ACCGGATTCG GGAGAAATCC TGATCAATGG CCGGATCCCT 
TTGGCCGTCC TGGACCGGGA AAGCTGGTGG CGGCAACTGG CCTGGGTGCC GCAGAATCCC 
CGCCTGTTTC ACGGTACCAT CGCCGAAAAT ATCCGCATCG GGCGCCCTGA TGCGGATATG 
GCCGCCCTGC GGGAGGCCGC GAAAAACGCT CACGCGCTGG AATTCATCGA GGCTTTGCCC 
CAGGGCTTCG ATACCCCGGT GGGGGATCTG GGGCAGGGCC TTTCCGGCGG CCAGATTCAG 
CGCGTCGCCT TGGCCCGCGC CTTTGTCAAA AACCCACCGA TCTTCATTCT GGATGAGGCT 
ACGGCGAGTC TGGACATGGA GAATGAATCG CTAGTCCTGG ACGCCATGCA GCGGCTGATC 
CAGGGACGAA CGGCGATCGT CATTGCGCAC CGCCTGGCGA TGGCAGAACG CGCTGATCAG 
ATCCTGGTCA TGGACGCCGG GAAAGTGGTC GAAGCCGGTA CCCATAATGC ACTTTTGGCG 
GCTGGCGGTG TCTACGCAAG GCTGGCGGCA GCCTATCGGG GGGACCATGC GTGA 

 

Protein sequence

MDQRLMREGR RTRGTLYFGI GLGLAAGLLI ILQAFLLAHI VDDVSFHGWN LAAVMPLLWI 
MLALFVVRAG FSWASELVAF HASARIKTYL RERLLSHLLN LGPVAVAGER SADIASTMIE 
GVEALEPYFS RYLPQMALVS LIPLAILVFV FPADWISGLI LLIAGPLVPF FMVLVGYKAE 
AINQRQWRKM LLMSAHFLDM VQGLTTLKIF GRAKDEIEIV ARISDDYRRT TMAGLRVAFL 
TSAVLEFFAS VSIALVAVSL GARLLEIPPP VTFYTAFFVL LLAPEYFNPL RGLAIHYHAR 
MSAIAAARRI FDILDTPLPA QGTQTMAYPD TQSVSLSVHD LHFSYEEGRV ALAGVNAEFP 
AGKVTALVGA SGAGKSTLAN ALLGFVQPDS GEILINGRIP LAVLDRESWW RQLAWVPQNP 
RLFHGTIAEN IRIGRPDADM AALREAAKNA HALEFIEALP QGFDTPVGDL GQGLSGGQIQ 
RVALARAFVK NPPIFILDEA TASLDMENES LVLDAMQRLI QGRTAIVIAH RLAMAERADQ 
ILVMDAGKVV EAGTHNALLA AGGVYARLAA AYRGDHA