Gene AFE_0757 details

Gene Information

• Locus tag: AFE_0757
• Symbol: ligA
• ID: 7134217
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Acidithiobacillus ferrooxidans ATCC 23270
• Kingdom: Bacteria
• Replicon accession: NC_011761
• Strand: +
• Start bp: 685778
• End bp: 687793
• Gene Length: 2016 bp
• Protein Length: 671 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 643529163
• Product: DNA ligase, NAD-dependent
• Protein accession: YP_002425245
• Protein GI: 218666742
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II)
• TIGRFAM ID: [TIGR00575] DNA ligase, NAD-dependent

Plasmid Coverage information

• Num covering plasmid clones: 4
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGGAGCGGG TCAACCATAC TGACTTCGAG CGTATTCAGC AATTGCGTGC GGAACTGGTG 
GCGGCCAATA ACGCCTACTA TCGGGAAGAT TCGCCGACCC TGAGTGATGC CGAGTACGAT 
GCGCGCCTGC GCGAACTGCG CACCCTGGAG GACCGTAATC CCCAATGGCA AAGCGCCGAC 
TCTCCGACCC AGAGGGTCGG GGCGGCTCCG GTGGAGGTCT TTGGGGAAGT GCATTATGCC 
ATACCCCTGA CCTCTCTCGA CAATGTGTTC GATCAAGACG GTTTTAGCGA CTGGCTGGCG 
CGCGTGCAGA AGGGGCTCGG CCGCGAGGAT GTTCCGCTCA GTGCTGAACC CAAGTTTGAC 
GGTCTCTCGG TCAACATTCG CTACATCGAG GGTAAGCTGG TACAGGCTGG TACCCGTGGA 
GATGGCCAGA CCGGTGAAGA TGTCACCGCC AACGTCCGCA CCATTCGCAA CGTCCCCCTG 
CAACTGACAG GCAAGGACTG GCCGGAGCTG CTGGAAGTCC GTGGAGAGGT GGTCATCCCC 
GTGGCCGCTT TCCGGCGTCT GAATGGCGAG CGTCTGCGCG CCGGGGATAA CCCCTTTGCC 
AACCCCCGCA ATGCGGCGGC AGGCAGTCTG CGACAACTGG ATTCCAGCGT AACGGCAAAG 
CGCCCCCTCG CGTACTTCCC CTGGGGATGG GGAGAAAGCA GCGTGCCACT GGGGAAAAGC 
CACATCGCGG TTATGGAACG CCTTTCTGCC TGGGGCTTCG AGGTGACCTC CTATCTGCGC 
GGTGTTCACG AACTCACGGA ATGCCAACGC TATTTCAGCG AGATGCAGAA AATACGCGAA 
GGCATGCCTT TTGAAATAGA CGGCCTCGTG TTCAAAGTTG ACGATCTGCT CGCCAGGGAA 
CAGTTGGGCT TCACCGCCCG CGCACCGCGT TGGGCCATTG CCTATAAATT TCCGGCGCAC 
GAAGAGCGTA CCGTGGTCGA AGATATCCTG GCTTCCGTAG GGCGCACCGG TGTGATTACT 
CCTGTGGCTG TCTTGAAGCC CGTGCAGGTG GGCGGCGTAA CCGTGAGCCG CGCCAGCTTG 
CATAATCAGG ATGAAGTGGA TCGTAAGGAT ATTCGCGTGG GCGACACGGT GCTGGTACGC 
CGCGCCGGCG ACGTGATCCC GGAAGTGGTC ATGGTGATCA AAGAGGAGCG GCCGCCTGCG 
ACACAACCCT GGCACATGCC GCAGCGTTGT CCGGTCTGCG GCTCGGAGGT CTTGCGCCTG 
GCCAACGAGT CGGCGCATCG TTGCATGGGC GGGCTGTACT GCCCGGCACA GCGGATGGGC 
GCCATTCGGC ACTTTGCGTC GCGTCGGGCC ATGGACATCC GGGGGCTGGG CGAAAAGCTC 
GTTGAGCAAC TGGTCGGGCA TGGTCTGGTG CACACCGTGG CCGATATCTA CCATCTGGAT 
GAAGCGGCTC TGTGCGGCTT GGAGCGCATG GCCAGCCGTT CGGCGCAAAA GCTCCTCGCC 
GAAATCGATC GCTCCCGCCA TACCTCCTTG CCCCGTTTTC TCTACGCCCT GGGTATCCGT 
CAGGTTGGGG AGGGTACGGC CAAATCCCTG GCCATCTATT TCGGGGATCT GGACCCCCTG 
ATGGCCGCAA CACCGGAGCT TTTGCAGAAC ATTCCCGATG TAGGGCCTAT CGTGGCGGAA 
TCCGTTGCCC ATTTTTTTGC CCAGCCCCAT AACCGCGACG TCATTGCCGC CCTGCGCGCG 
GCAGGAGTAC AGTGGGCTGT GGTCCAGCCG CAAAAAGGCG GGCGTTTTCA GGGTATGACC 
CTGGTGCTCA CCGGAGCCTT GGACAACATG ACCCGGGAAG AGGCCAAAAC CGCCATAGAA 
AACGCGGGCG GGAAAGTCAG CGGTTCCGTG TCGGCCAAAA CAAGCTATGT GGTAGTCGGC 
AAGGATCCCG GCAGTAAGGC CGAAAAGGCC GCAAAGCTGG GTGTGAAACA GCTTACCGAG 
GCGCAATTTT TGGCGATGTT TTCAGAAAAG GAATGA 

 

Protein sequence

MERVNHTDFE RIQQLRAELV AANNAYYRED SPTLSDAEYD ARLRELRTLE DRNPQWQSAD 
SPTQRVGAAP VEVFGEVHYA IPLTSLDNVF DQDGFSDWLA RVQKGLGRED VPLSAEPKFD 
GLSVNIRYIE GKLVQAGTRG DGQTGEDVTA NVRTIRNVPL QLTGKDWPEL LEVRGEVVIP 
VAAFRRLNGE RLRAGDNPFA NPRNAAAGSL RQLDSSVTAK RPLAYFPWGW GESSVPLGKS 
HIAVMERLSA WGFEVTSYLR GVHELTECQR YFSEMQKIRE GMPFEIDGLV FKVDDLLARE 
QLGFTARAPR WAIAYKFPAH EERTVVEDIL ASVGRTGVIT PVAVLKPVQV GGVTVSRASL 
HNQDEVDRKD IRVGDTVLVR RAGDVIPEVV MVIKEERPPA TQPWHMPQRC PVCGSEVLRL 
ANESAHRCMG GLYCPAQRMG AIRHFASRRA MDIRGLGEKL VEQLVGHGLV HTVADIYHLD 
EAALCGLERM ASRSAQKLLA EIDRSRHTSL PRFLYALGIR QVGEGTAKSL AIYFGDLDPL 
MAATPELLQN IPDVGPIVAE SVAHFFAQPH NRDVIAALRA AGVQWAVVQP QKGGRFQGMT 
LVLTGALDNM TREEAKTAIE NAGGKVSGSV SAKTSYVVVG KDPGSKAEKA AKLGVKQLTE 
AQFLAMFSEK E