Gene AFE_0538 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAFE_0538 
Symbol 
ID7134390 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidithiobacillus ferrooxidans ATCC 23270 
KingdomBacteria 
Replicon accessionNC_011761 
Strand
Start bp470323 
End bp471849 
Gene Length1527 bp 
Protein Length508 aa 
Translation table11 
GC content65% 
IMG OID643528945 
Producthypothetical protein 
Protein accessionYP_002425030 
Protein GI218666549 
COG category[K] Transcription 
COG ID[COG1293] Predicted RNA-binding protein homologous to eukaryotic snRNP 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.24326 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGACACCT TGCAACTTGC CGCCGCCGCC CAGTGCCTGG ACCGCCAGCT CGCGCAGCAG 
GCCATCCAGG GCATCAGCGA CGCGCCCGGG GGGATTTATC TGCACACCGC CACGGCGCAT
ATCGCACTCA TCGTGCAGCG TGCCCCCTTG GGGCTCTGGC AGGACCCGGC ATTCCATAAG
TCAGGCGCCC TGACCACGTG GAGTACTCCG CTCAATCAGC GTTTGGTGGG TTTTCGCATT
CAGCGCATCA GCGTGCCCTG GGCGGATCGC ATCGTGCGCA TGGATTGCCG CCGCGTCCAT
ATCAGCAAGC GGGTGGACCA GATCATCCTG ATTGCCGAAT GCTTTGGCGG ACGCGGCAAT
ATCGCCCTGC TCGATGCGGC GCAGCGTATC CGCTGGGCCT GGCGCTGGGA CAGTCTCGGC
GGTAAGGCCA CGCCGCGCTT CCTGCCCGGC GTGGTGTATG TACCGCCGGA AGACAGTCTG
CCCTTTGACC AGCCCTTACC GAGTGCCGCC GCCTGGCTGC GCCGCGTCGC ACCCCGTTAT
CGCCCGCAGC ACACGGCCGA GCAGCAGGCC ATGCAGGAGG CCTGGTTGCA GCGCGCAGAC
CCCTGCGCGC CCTGGTGGCG GTCTTCGGCG GAAGCCGACC ACTCCGTCCT CTACCCTGTG
CCCCTACCCG ACTGGGCACC GATGCAGGAG ATTCCGGCAC AGGAAGCGTT GCGCTTTGCG
CCCCCCACCG CACCCTCGGC ATCCTCGGCA CAGGAACGGA CCCTCGCCTT GCAGCGGGAA
CGTCTGCAAC ACCGCATCCG GAACATGCGC CAGGATATGG CGCGCTGGGA GGACCCAAAG
GTATATCGTG CCCAGGCCTT CGCCCTCTTC GCCCTGCCTG ACACGATGGC GTCGGACACC
CAGATCAGCG CCCCAGACCA CACCAGCGCA ACAGGTGCGC TCCTGACTAT TGCCCTAACA
CCGGGCAAGT TTCTGCACCA GCAGGCACAG TGGTATATGC AGCAGGCGCA ACGCAGTCAG
CGCGCACAGC GGGAAATCAC CAGCCGACTG CACGAGGCAG AGAAGCTGCT GGAACGCCTT
GGGGGTAGCG AGTCACATGC ACCGTCCGTG GACGGTGCGG CAGCCCACAC GTCGCCCACC
TCAGGAAACC CGGCAAAAAA AGGGAAACCG GAGGATGCCA CATTCCGTCA AACCGTCATC
GACGGCTTTA CGATTCTCTG GGGCAAAAAT GCCAGGGAAA ATGACCGCCT GACCTTCCGC
ACGGCCAAGG CCTGGGACCT ATGGTTTCAC ATTCAGGATT TAGGCGGCAG CCATGTGGTG
CTGCGCCGGG AGAACAGTCA GACGCCGGTG CCCGAATCGG TGCTCGCCGC TGCCGCACGC
ATTGCCCTGC AGCAAAGCCA GTCCCGCGCC ATCAGCGGCG AGGTGGACTG GACGGAAATT
CGCCACGTCC ACCGTAAACC GAGCGGCGGA CCCGGAGAGG TGACCTACCG CCATTTTCAG
AGCATCCGGG TGCGCCGCGA CGGCTGA
 
Protein sequence
MDTLQLAAAA QCLDRQLAQQ AIQGISDAPG GIYLHTATAH IALIVQRAPL GLWQDPAFHK 
SGALTTWSTP LNQRLVGFRI QRISVPWADR IVRMDCRRVH ISKRVDQIIL IAECFGGRGN
IALLDAAQRI RWAWRWDSLG GKATPRFLPG VVYVPPEDSL PFDQPLPSAA AWLRRVAPRY
RPQHTAEQQA MQEAWLQRAD PCAPWWRSSA EADHSVLYPV PLPDWAPMQE IPAQEALRFA
PPTAPSASSA QERTLALQRE RLQHRIRNMR QDMARWEDPK VYRAQAFALF ALPDTMASDT
QISAPDHTSA TGALLTIALT PGKFLHQQAQ WYMQQAQRSQ RAQREITSRL HEAEKLLERL
GGSESHAPSV DGAAAHTSPT SGNPAKKGKP EDATFRQTVI DGFTILWGKN ARENDRLTFR
TAKAWDLWFH IQDLGGSHVV LRRENSQTPV PESVLAAAAR IALQQSQSRA ISGEVDWTEI
RHVHRKPSGG PGEVTYRHFQ SIRVRRDG