| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | AFE_0431 |
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| Symbol | rluD |
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| ID | 7136318 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011761 |
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| Strand | + |
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| Start bp | 374824 |
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| End bp | 375783 |
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| Gene Length | 960 bp |
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| Protein Length | 319 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 643528842 |
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| Product | ribosomal large subunit pseudouridine synthase D |
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| Protein accession | YP_002424927 |
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| Protein GI | 218667498 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGACG ATAGTACGGG ACTTCCCATG ATTTTGCCAG AGGAGCAGGC CGGCGAGCGC
CTCGACACGG TGTTGAGCCA GTTGCTGCCG GAAACCAGCC GCAGTCGTAT CCAGGCCCTG
CTGCGCGATG GCCGGATTCT GGTGGATGGC ACGCCCGAAA AGCCCAGTGC GCGGGTGCGC
GGCGGTGAGC AGGTGATGGT CGACTGGCCG CAGATCGAAC CCAGCAACTG GCTGGCCGAG
GGCCTGCCCC TGCATATTCT GCACGAAGAC GCGGATATTC TTGTTTTGCA CAAGCCGGCG
GGGCAGCTTA CCCACCCCGG CGCCGGTCAT GCCGACGGCA CGCTGGTCAA CGGCGTGCTG
GCCCATGTGC CGGAGAACGC CTATCTGCCC CGCGGCGGAA TCGTCCATCG GCTGGACAAG
GACACGACCG GTCTGCTGGT GGTGGCAAAA ACGGAAATGG CGCGGCAGTC GCTGATCGAT
CAGCTCGGTG ACCATACCAT GCACCGCGAG TATCTCGCGC TGGTGACGGG AGCGATGACG
GGAGGTGGCC GGGTGGACGC GCCCATCGGC CGGCACGCTC AGGATCGTCT GCGGATGACG
GTGCGTGATG ACGGCCGACC GGCGCAGACC GACTATCGGC TGGTGGAGCG CTTCCCCCGT
CACAGCTATC TGCGCCTGCG CCTGGCGACG GGCCGCACCC ATCAGATTCG TGTGCATATG
ACGCATATCG GCCACCCGCT GGTGGGCGAC CCGGTCTATG GAGGGCGGAT GACGGTGCCG
AAAGGACTGG ATGAGGCTGG GCTGGCCCGC TGGCGGCAGT TCCGTCGCCA GGCGTTGCAT
GCCTGGCGCC TGCGTCTTTA CCATCCCGCA AGCGGAGAAC TGATGACCTG GGAAAGCCCG
CTGCCCGACG ACATGACCGA ATTGCTGGCG CTGCTGCGCC ATGCGCGTGA TGGTGACTGA
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| Protein sequence | MSDDSTGLPM ILPEEQAGER LDTVLSQLLP ETSRSRIQAL LRDGRILVDG TPEKPSARVR
GGEQVMVDWP QIEPSNWLAE GLPLHILHED ADILVLHKPA GQLTHPGAGH ADGTLVNGVL
AHVPENAYLP RGGIVHRLDK DTTGLLVVAK TEMARQSLID QLGDHTMHRE YLALVTGAMT
GGGRVDAPIG RHAQDRLRMT VRDDGRPAQT DYRLVERFPR HSYLRLRLAT GRTHQIRVHM
THIGHPLVGD PVYGGRMTVP KGLDEAGLAR WRQFRRQALH AWRLRLYHPA SGELMTWESP
LPDDMTELLA LLRHARDGD
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