| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | AFE_0369 |
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| Symbol | mfd |
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| ID | 7134439 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011761 |
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| Strand | - |
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| Start bp | 316579 |
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| End bp | 320028 |
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| Gene Length | 3450 bp |
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| Protein Length | 1149 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 643528781 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_002424872 |
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| Protein GI | 218666669 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGGATCGAA GTCTTTCTCT CGGCACCCCG CCGCGCGCCG GGGCGGCACG CGCATTTAGT
CAAATTTACG GTGCTGCGGA TAGCTGGCTG GCAGCGCAGA TGACGCGGCA GTGGCAGCGC
CCGCTACTGA TTCTGCTGCC GAACGCCCGC GACGTGGAGG AATGGCAGCG CGAGTGGCGT
TTTTTCGCAC CGGACTTGCC CGCGCCGCTG GTTTTCCCGG ACCGCGAAAT CCTTCCCTAT
GACCGCTTGG CGCCGCCGGC AGATGCCACG GCCACCCGAC TGGCTACCCT TGCCACCTTG
CCGGAATGGC GTGGCGTTTG TCTCGCCCCC CTGTCCGCCG TCCTGCAACG CCTGCCACCG
CGCAGTTTCC TCGACCAGCA CGCTTTTGTC CTAGCCGTGG GCGACCACCT GAGTCCGGAA
GGTTTTCGCC AGCGCCTGAT CGACGCCGGC TACCGCAACG TCAGTGAAGT CTCTGAGGCC
GGCGAATTGG CCTGGCGTGG TGGAATCATC GATCTCTTTC CCAGCGGTAG CCCCCTGCCC
TATCGCATCG AGCTCTTCGA TAGGGTCGTG GAAAGCATCC GTGCCTTTGA TCCGGAAACC
CAGCGTACCC TGCAAAAGGT CGAGGGGGTC TCTCTGCTCC CGGCGCGGGA AGTGCCGGTG
GACACCGCCG CGCTACAGGA ATTTCGCAGC CGCTTCCGCG CCCGGTTCAG CGGTGACCCG
CAACGCGCCG AGATATACCG GGCGGCCAGC CGGGGACAGG CGCCCCAAGG CGCCGAGCAT
TATCTTCCGC TCTTCTTTCC GGAGTGCAGC CACCTGCTGA TGCACTTTCC CGTAGACGGC
GTCGTCTTTC TCCCGCCCGG TCTGGAAGCA TCCGCCCGGC ACATTCGTCA GGACTGGCAG
GAGCGCTATG AGGAACGGAG CCACGACACG GTGCATCCCA TACTGCCGCC TGATGAACTG
CTCCTCCCCC CCAGTGAATG GGAAGATGTC CTGCGCGGTC GGGCGCGGGT ATATGGGCAA
CAGGAGGGCG ATGCGGAGCG TCTGCCGACC GCTCCCCTCC CCGATCTTCA TGGCAGCCCG
GAAGCGCCAC TAGCCTCACT GGATACTTTT CTTCGCCATC TGCCGACCAC GGGCCGGGTC
ATCCTCGCCG CTGAATCACC CGGCCGTCAG GAAGCCCTGT CGGAACGGCT TGGCAAGAGC
GGACTGCTCC CCAGCCGGGT GCATGACTGG CCGGAGTTCC TGGCCGGTAC GGAACGGATC
GCCATCACCG TAGCACCCCT GGAACGCGGC CTGCTCATCA AGGAAAATGG CCTGGTCAGA
CTGGCGCTGG TCTCCGAGGC GCAGATTTTT GGTGATCGCG TCTTTGCCCA GCGGCGTAGT
GCCAACGCCC GACAGCGCAG CATTGAAGGC TTGGTCCGCG ATCTCGGCGA GTTACAGCCG
GGTGATGCCG TTACCCATGA GGAATACGGC ATCGGCCGTT TTCAGGGCAT GGCTACGCCC
TTTGCCTCCC AGGGAGACAT CAATGAATAT GTGGTCCTGG AGTACGCCAA CGGCGATCTC
GTCTACGTCC CGGCGGATCA TCTGGATCGT ATCGCCCGCT ACGTGGGTAA TGGTGCGACG
GAACCGGTGC TCTCCCGCCT CGGCAGCAAT CACTGGGAAA AAGTCAAGGC CAAGGCGCGG
CAAAAGGCCG TCGATGCCGC CAGCGAACTG CTGGACATCT ATGCTCGTCG CGCGGCGCGC
ACCGGTCGGG CTTTCCCCGA ACCGGATGAC GCCTATTGGG AATTCGTGTC CCGCTTTCCC
TTTGAGGAAA CCCCGGATCA GCAGCAGGCC ATTGACGCCG TCATTGCCGA TATGACCAGC
CCCCACCCCA TGGACCGCCT GGTCTGCGGC GATGTCGGCT TCGGCAAAAC CGAGGTGGCG
CTCCGTGCGG CTTTTCTGGC GGCGCACAGT GGTGCGCAGG TGGCCGTACT GGTCCCCACC
ACCCTGCTCG CCCAGCAGCA TTACGAGAAT TTCCGGAACC GCTGCGCCGG GCTGCCCCTG
CGGGTGGAAG TGCTCTCCCG TTTCCAGAAT GCCAAAACGC ACAAGCAAGT GCTCACGGCA
GTGTCCGTAG GGGAGGTGGA TATCCTGATC GGCACCCACC GCCTGCTGCA AAAGGATGTC
GCCTTCCACG ACCTGGGGCT GCTGATTCTG GATGAGGAGC ATCGCTTCGG GGTACGCCAG
AAGGAGCGGA TCAAGGCCCT GCGCGCCGAG GTGGATATCC TCACCCTGAC CGCAACGCCG
ATCCCCCGCA CTCTCAATCT CTCGCTGGCC GGCCTGCGTG ACTTATCCAT CATCGCCACG
CCACCCCAGC GCCGCCAGCC GGTACGCACC TTTGTGCAAA TCTGGGATGA TGCGACGGTG
ATCGAAGCCT GCCAGCGCGA GCTGCATCGC GGCGGTCAGG TATATTTTCT GCATAATGAG
GTACGCGACA TCGAGCGCAT GGCGGCCACA CTGCGCCGCC TGCTGCCGGA AGCGCGCCTG
CGCGTGGCCC ATGGCCAGAT GCCCGAGGGC GAACTGGAAG CGGTGATGCT GGATTTTTAC
CATCAGCGCT TCGACATCCT CCTCTGCACC ACCATCATCG AGTCGGGGAT CGACAACCCC
CATGCCAACA CCATCCTCAT CAACCGCGCC GATAAATTTG GTCTGGCCCA GCTCCATCAG
TTGCGCGGCC GGGTTGGTCG TTCCCATCAA CGCGCCTACG CCTACCTGTT CACCCCGGAC
CTTCGGGCCA TGAGCGACGA TGCCCGGCGC CGCCTCGACG CCATCCAGTC CCTGGAAGAT
CTGGGCGTCG GCTTTGCCCT GGCCAGCCAC GATCTGGAAA TCCGCGGTGC TGGCGAGTTG
CTCGGCGAAG AGCAGAGCGG GCACATGGAT GAGGTGGGGT TCACCCTCTT CATGGAATGG
CTGGACGATG CCGTGGAAGC CATCCGTGCC GGGCGGGATC CCCGCAGTCT GGAAGAACAA
CGCACGAGCG GTCCCGAGAT CCATCTCAAC ACACCGGCGC TCATCCCCGA CGACTACCTG
CCCGACGTGC ATTTGCGCCT GCAACTATAC AAGCGCCTCA GCGATGTGCG CAGTGACACC
GCCATCGGTG AGATCATGGT GGAGATGATC GACCGCTTCG GACCCATTCC GGCGCCGGCC
CGCACCCTGC TCTGTCAGAC CCGGTTGCGT CTTGTCGCTA TCCAGACCGG CATTGAACAG
ATCGATGCCG GCCCCGCCGG TGCCCGCCTG CAATTCGCCG CCGAAAACCA GGTGGCCCCC
GACAAAATCA TCCGGCTCAT CCAGCAACCT CACAGCATCT ACCAACTGGA TGGCGAGCAC
CGCCTGCGCA TCCGCCGCGA CCTGCCCGAC GGCGAAGCGC GCTGTCAGGA ATTGCTGCAA
CTCATCGACC AACTGAGGAT TCAACCATGA
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| Protein sequence | MDRSLSLGTP PRAGAARAFS QIYGAADSWL AAQMTRQWQR PLLILLPNAR DVEEWQREWR
FFAPDLPAPL VFPDREILPY DRLAPPADAT ATRLATLATL PEWRGVCLAP LSAVLQRLPP
RSFLDQHAFV LAVGDHLSPE GFRQRLIDAG YRNVSEVSEA GELAWRGGII DLFPSGSPLP
YRIELFDRVV ESIRAFDPET QRTLQKVEGV SLLPAREVPV DTAALQEFRS RFRARFSGDP
QRAEIYRAAS RGQAPQGAEH YLPLFFPECS HLLMHFPVDG VVFLPPGLEA SARHIRQDWQ
ERYEERSHDT VHPILPPDEL LLPPSEWEDV LRGRARVYGQ QEGDAERLPT APLPDLHGSP
EAPLASLDTF LRHLPTTGRV ILAAESPGRQ EALSERLGKS GLLPSRVHDW PEFLAGTERI
AITVAPLERG LLIKENGLVR LALVSEAQIF GDRVFAQRRS ANARQRSIEG LVRDLGELQP
GDAVTHEEYG IGRFQGMATP FASQGDINEY VVLEYANGDL VYVPADHLDR IARYVGNGAT
EPVLSRLGSN HWEKVKAKAR QKAVDAASEL LDIYARRAAR TGRAFPEPDD AYWEFVSRFP
FEETPDQQQA IDAVIADMTS PHPMDRLVCG DVGFGKTEVA LRAAFLAAHS GAQVAVLVPT
TLLAQQHYEN FRNRCAGLPL RVEVLSRFQN AKTHKQVLTA VSVGEVDILI GTHRLLQKDV
AFHDLGLLIL DEEHRFGVRQ KERIKALRAE VDILTLTATP IPRTLNLSLA GLRDLSIIAT
PPQRRQPVRT FVQIWDDATV IEACQRELHR GGQVYFLHNE VRDIERMAAT LRRLLPEARL
RVAHGQMPEG ELEAVMLDFY HQRFDILLCT TIIESGIDNP HANTILINRA DKFGLAQLHQ
LRGRVGRSHQ RAYAYLFTPD LRAMSDDARR RLDAIQSLED LGVGFALASH DLEIRGAGEL
LGEEQSGHMD EVGFTLFMEW LDDAVEAIRA GRDPRSLEEQ RTSGPEIHLN TPALIPDDYL
PDVHLRLQLY KRLSDVRSDT AIGEIMVEMI DRFGPIPAPA RTLLCQTRLR LVAIQTGIEQ
IDAGPAGARL QFAAENQVAP DKIIRLIQQP HSIYQLDGEH RLRIRRDLPD GEARCQELLQ
LIDQLRIQP
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