Gene AFE_0327 details

Gene Information

• Locus tag: AFE_0327
• Symbol: rplC
• ID: 7135321
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Acidithiobacillus ferrooxidans ATCC 23270
• Kingdom: Bacteria
• Replicon accession: NC_011761
• Strand: +
• Start bp: 292903
• End bp: 293535
• Gene Length: 633 bp
• Protein Length: 210 aa
• Translation table: 11
• GC content: 59%
• IMG OID: 643528739
• Product: 50S ribosomal protein L3
• Protein accession: YP_002424830
• Protein GI: 218666383
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0087] Ribosomal protein L3
• TIGRFAM ID: [TIGR03625] 50S ribosomal protein L3, bacterial

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.322183
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGTAATGG GCCTGATCGG ACGGAAAGTA GGTATGACGC GCATCGTTGC AGGCGATGGG 
CGTGTGCTGC CGGTAACCGT CATTCATGTG GCGCCGAATA CGGTGGCACA GGTTAAAGAT 
ATCGCCACGG ACGGTTACTG TGCAGTGCAG GTGGCAACCG GTACGCGCCG TCCACAGCGG 
GTAACTTCTG CTTTGGCAGG ACACTTTCGT AAAAATGGCA TTGCTCCCGG GCGGCTATTA 
CGGGAATTCC GCGTGGCAGA TACCGCCAAT TATGCGTGCG GTATGGACAT TGATCTGGAC 
ATCTTCGCTG AAGGGCAGCG CGTGGATGTG TCGGGCGTGA GCAAGGGAAA AGGCTTCGCC 
GGCGCTATCA AGCGCCATAA TTTCCGGAGT AACCGCGCGA GTCATGGTAA CTCCCTGTCC 
CACCGTGCAC CGGGATCCAT CGGTTGTCGC CAGACGCCGG GCCGCGTGTT CAAGGGCAAG 
AAAATGGCCG GACACCTGGG CGCAGAACAG GTCACAACAC TCAATCTCGA GTTGGTACGC 
ATCGATGCCA ATCGTCGCCT GCTCATGATC AAGGGTGCCG TCCCTGGTGC GCGAGACGGT 
GACGTGATGA TTCGTCCCGC CGTGCGTGGT TAG 

 

Protein sequence

MVMGLIGRKV GMTRIVAGDG RVLPVTVIHV APNTVAQVKD IATDGYCAVQ VATGTRRPQR 
VTSALAGHFR KNGIAPGRLL REFRVADTAN YACGMDIDLD IFAEGQRVDV SGVSKGKGFA 
GAIKRHNFRS NRASHGNSLS HRAPGSIGCR QTPGRVFKGK KMAGHLGAEQ VTTLNLELVR 
IDANRRLLMI KGAVPGARDG DVMIRPAVRG