Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | AFE_0203 |
Symbol | ddlB |
ID | 7134436 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
Kingdom | Bacteria |
Replicon accession | NC_011761 |
Strand | - |
Start bp | 179117 |
End bp | 180043 |
Gene Length | 927 bp |
Protein Length | 308 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 643528617 |
Product | D-alanine--D-alanine ligase |
Protein accession | YP_002424712 |
Protein GI | 218665251 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1181] D-alanine-D-alanine ligase and related ATP-grasp enzymes |
TIGRFAM ID | [TIGR01205] D-alanine--D-alanine ligase |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.43186 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCTGATT TAGCCCGCAT CGCCGTACTT TACGGAGGCC CCTCCGGAGA ACGCGAAGTC TCTCTCGACA GCGGTCACGC CGTGTTGCAA ACCTTGCAGG GGCTGGGCAT GGATGCCGTC GGCGTCGACA TCCAGCCGGC CATCCTCCAG CAGCAAATGG CCGAAAGCGG AGCACAGATC GCCTTCAACG TCTGCCATGG CGCGGTAGGC GAAGACGGTC TGTTGCAGGC CTGCCTGGAG ACTCTGGATA TGCCCTACAC CGGCAGCGGT GTCCTCGCCT CCGCTCTCGC CATGGATAAA TGGCGCTGCA AGCAGCTCTG GCGAGCCGCC GGTTTACCGG TGACCGACGG CATCCTGCTG CATCGCGGCA GCCATACGCC CGACCTCGGC GCCCGCTTCG GCTGGCCCCT GTACATCAAG CCGAACCACG GTGGCTCCAG CCTCGGGGTC AGCAAAGTCG GCGGCCCGGC GGAATTGGAT GCGGCCTTGC AGTGCGCCTT CGCCATCGAG GATGAAGTCC TCTGCGAGGG TGCCGTCATC GGTCACGAAG TCACCGTCGG CATCCTCGAT GGCCAGGCGC TGCCGCCGAT CGTCATCGAA ACGCCCCGGG CCTTCTATGA CTACACCGCC AAGTATCTCG CCGACGATAC CCGTTATCTC CTGCCCTCCG GCCTCGGCGC TCCGCTGGAG CAGCAGTTGC AGGCACTTGC GCTCCGAGCC TTTGCCGAGC TCGGCTGCCG CGACTGGGGG CGGGTCGACT TCATGATCGG CGGCGACGGT CGACCCCATC TGCTGGAAGT CAACAGTGTG CCCGGCATGA CCAGCCACAG CCTGATTCCC ATGGCCGCCA AAGCCACCGG CATGGGCTTC CCGGAATTAT GCGCCACCAT ACTGCGCACC GCGCAGAGGA GAGTGAAACA TGGTTAG
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Protein sequence | MSDLARIAVL YGGPSGEREV SLDSGHAVLQ TLQGLGMDAV GVDIQPAILQ QQMAESGAQI AFNVCHGAVG EDGLLQACLE TLDMPYTGSG VLASALAMDK WRCKQLWRAA GLPVTDGILL HRGSHTPDLG ARFGWPLYIK PNHGGSSLGV SKVGGPAELD AALQCAFAIE DEVLCEGAVI GHEVTVGILD GQALPPIVIE TPRAFYDYTA KYLADDTRYL LPSGLGAPLE QQLQALALRA FAELGCRDWG RVDFMIGGDG RPHLLEVNSV PGMTSHSLIP MAAKATGMGF PELCATILRT AQRRVKHG
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