Gene AFE_0031 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAFE_0031 
SymboltrmE 
ID7134148 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidithiobacillus ferrooxidans ATCC 23270 
KingdomBacteria 
Replicon accessionNC_011761 
Strand
Start bp34591 
End bp35946 
Gene Length1356 bp 
Protein Length451 aa 
Translation table11 
GC content65% 
IMG OID643528448 
ProducttRNA modification GTPase TrmE 
Protein accessionYP_002424545 
Protein GI218667012 
COG category[R] General function prediction only 
COG ID[COG0486] Predicted GTPase 
TIGRFAM ID[TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.785205 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGATTATC AGCAGGGAGA CACTATCGTG GCGATTGCCA CGCCGCCGGG AGAAGGCGGT 
GTCGGCATTT TGCGCTTCTC CGGACCACAG GCGCCGTCCA TCGCGACGGC GCTCTGCGGC
CGGCGGTCCG CCAAACCGCT GACACCCCGT CATGCTCATT TTCGCCGCTT TTACGCCCGC
GACGGCAGCC TGATCGATCA CGGCATTGTC CTCTATTTTC CAGCCCCGAA CAGCTACACC
GGCGAAACCG TCGTGGAATT GCAGGGCCAT GGCAGCCCGC TGGCCCTCGC CAGCCTGCTC
ACCGAGGCTA TCGCCCTTGG CGCACGGGCG GCGCGTGCCG GGGAGTTCAG CGAACGGGCC
TTTCTCAATG GCCGGCTTGA TCTTGCCCAG GCCGAAGCGG TGGCCGACCT CATCCACGCC
CGCAGCGATG CTCAGGCACG AGCCGCGGCA GCGAGTCTGG AGGGCGCCTT TTCACAAGCC
GTCGATGACA TTCACGGCCA GCTCCTGCGC CTTCTCGCTC TCGCCGAAGC CGGACTGGAC
TTCAGTGAAG AAGACCTTGG CGATGCCCAT GCGCAGGCCA TCAGCGACAG CCTGGTACGG
CTGGATGCTC AGGTCGCCCA TCTGCTCAAG CAGGCACAGC AAGGCGCCCG ACTCGCCCGC
GGCGGTCGCG TGGTGCTCGC CGGACGACCC AACGTCGGCA AGTCCAGCCT GATGAACGCC
CTCGCCCGGC GCGAGTCAGC CATTGTCACC GCCATCCCCG GCACCACCCG CGACCTGCTC
CGAGAGGAGA TCATCCTCGG CGGACTGCCG GTGGAACTCG TCGACACCGC GGGACTGCGC
GAGGCGACGG ACGCCGTGGA GGCGGAGGGC GTCGCCCGCG CCCGCAACAT ATTGCACAGC
GCACAACTGA TCCTGCTGGT GGCTGATGCG AGCACGGGAT GGCAATCGGA GGACGAAGTC
ATCCTGCGCG ACCTACCGGA AGGACCGCGC CGCATCATCT GGAACAAAAT GGATCTGGTT
TCCGCACCAC CCGCCACCCC GACGGGTGAG GAAGCCATAA CACTCTCCGC CCAAACCGGC
GCAGGTCTCG ATACATTACA CTGCAGCCTG ATTGAAGCAC TGGGGGTGCA GGGCGACAGT
TGCCCCTTCA GCGCGCGCCG TCGCCATGTC GAAGCCCTGG AAAGCTGTGC GCACCGGCTC
GGCATCGCAG GTGACACGCT CCGCCTGGGA GATGCCCCGG AACTGGTCGC CCAGTCCCTG
CGTGAAGCCG CGGCAGCGTT GGCCGGCATC ACCGGCCACA TGGACGTGGA AGACATTCTC
GGCGAGATTT TTTCGCGCTT TTGCATCGGG AAATAA
 
Protein sequence
MDYQQGDTIV AIATPPGEGG VGILRFSGPQ APSIATALCG RRSAKPLTPR HAHFRRFYAR 
DGSLIDHGIV LYFPAPNSYT GETVVELQGH GSPLALASLL TEAIALGARA ARAGEFSERA
FLNGRLDLAQ AEAVADLIHA RSDAQARAAA ASLEGAFSQA VDDIHGQLLR LLALAEAGLD
FSEEDLGDAH AQAISDSLVR LDAQVAHLLK QAQQGARLAR GGRVVLAGRP NVGKSSLMNA
LARRESAIVT AIPGTTRDLL REEIILGGLP VELVDTAGLR EATDAVEAEG VARARNILHS
AQLILLVADA STGWQSEDEV ILRDLPEGPR RIIWNKMDLV SAPPATPTGE EAITLSAQTG
AGLDTLHCSL IEALGVQGDS CPFSARRRHV EALESCAHRL GIAGDTLRLG DAPELVAQSL
REAAAALAGI TGHMDVEDIL GEIFSRFCIG K