| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | AFE_0007 |
|---|
| Symbol | |
|---|
| ID | 7136858 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011761 |
|---|
| Strand | + |
|---|
| Start bp | 9620 |
|---|
| End bp | 12064 |
|---|
| Gene Length | 2445 bp |
|---|
| Protein Length | 814 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 643528425 |
|---|
| Product | outer membrane usher protein, putative |
|---|
| Protein accession | YP_002424522 |
|---|
| Protein GI | 218665167 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3188] P pilus assembly protein, porin PapC |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGACCAGTC GGTCCGGGTT GTTGGCAGTC CATGATCAAT CGCGCTCCTT CGCGATACGG
TTCGCCGCCG CGATCGTCGT CGCGCTGATC TTGATGGGTG CGGCACAGAG GGCAATAGCT
GGCGGTGGTG AGACGCTGCT GCTCTCCGTA GTGGTCAACG GCTACCATAC GGGCAAGATT
GGCGAGTTTC GGTTGAACAA AGGCACGTTG CGCGCTCGGC CACAAGAGTT GCATGATCTT
GGCTTCAAGG TTCCCAAGTC CATTCCGGTC GGGACGGATG GCCGCGTCGC CTTGTCCGAA
CTTCCCGACT TTGCTTGGCA TATCGATCAG GCCACGCAGA CGCTTTACGT CACGGTGGGC
AGCAAACGGC TCTTGCCTCA ACTCCTGCAC ACCGAAACAA GCCCTGCCAG CGAGCTTCCG
GTGCAAAGCG GCCTTGGGGC GACCCTCGAC TACGATGTCA CCGGCACTTC GGTCGCAGGC
CAGAAACTGG GTGCCGGGCA ATTCAACTTC CGGGCCTTCT CGCCTTGGGG TGTGGCAAGT
TCGGGTCTGT TGGCCTATGT CGGCGGCGGC CCTCAGGGCC TGGGAACAAA CGCCGTAATA
CGCCTGAACA GCACCTATAC CTATTCGGAT CCGGAAACAC TGCGCCGCTA TCGCGTCGGG
GACTTCATTA CCGGTGGTTT GAGCTGGACC CGTCCGGTCC GCCTGGGTGG CATACAAATC
AGCTCAGACT TCTCTATGCG ACCTGATCTA ATTACCTTCC CATTGCCCGG CGTCAGCGGA
ACCGTCGCCG TTCCCTCGAC GGTCAACGTG CTGGTCAACG GCATGCAGGT GCTTTCGAGC
CAGGTGCGGC CCGGTCCCTT CGAGATCCCG CAGGTCCCGA TGATCACTGG TGCCGGAACG
GTGGTGACGA CGGTGACCAA TGCGCTCGGG CAACAGGTCA CTACGACCCT GCCGTTCTAT
GCCAGTGCGA ATCTGCTTGC GCCTGGACTG CAGACCTTCT CGGCCGGGCT TGGATTCGTG
CGGCTCAACT GGGGTTTCCT CAGCAACGAC TATGGCCCAT TGGCCGGATC CATAACCTTT
CGCCGTGGCC TCACGGACGC GCTGACGGTG GAAGCCCATG CCGAAGGTAC GCGGGGAGTG
GCCATGGCAG GCGGCGGTAT CGTGGTGAAT ATCGACAATC GTGGCGTACT GAATCTTTCC
GCCGCAGGCA GTACATCTCA AGGGCACACC GGTGCGCAGT TCTCCGTCGG GGTCCAGCGC
ATCGGCCGTG TTTTCAGCGC TGGCGCCTCG GCGATCTTTG CCGATCCCGA CTTTCGCGAT
ATAGCAGCAA TGAACGGAGA TCCGGTCCCG ACGCGCCAGA TCAGTGCCAA CGTCGGTCTG
TCCCTCGGCC GTTTCGGCTC CTTTGGTATC AGCTATGCCG GTATCGACCG TAATGCCGCA
TCGATGCCAA TCCCGGTATA CGCTCCACCC GGAACCGTGG TGACGGAAGG CGGGGCGCCC
GTAAGCGTAT ATTATTTCCT GCCTGCCGAA CACGCTCATA TCCTTTCGGC CAGCTATTCG
CTGCAGATTG GCCCAGTATC GTTCTACGCC ACGGGCTACC ATGATTTCGC CAATAGTGGC
GACAGTGGTG TGCAGATGGG AGTGACCATT CCGCTCGGCA GCCGGAGCTC GATCGGGGGT
AGTCTGGCAT CCTCTTCGGG AAACGATTCC GCTCAGGTGC AGCTCATGCA GTCCCCGGTC
ACGATCGGGG ACTGGGGCTA TCAGGCCTAC GCCACCACTG GCCGGACCAG CCAGGAATTC
GGCCAGTTGC AATACAAGTC GCCCTGGGGA CTTGTTTCGG CGGGCGCCAG TCGGATCGAC
CGGCAAACCC TGGTGCAGGG CGAGGTACGG GGCGCTCTTT CTTTTATGGA TGGCGGATTG
TTCGCGTCCA ACACCATCAA CAACAGCTTT GCCATCGTTG ATACCGATGG TTTCGGAAAT
ATTCGCGTCC TGGACGAGAA TCGGTTGGTT GGGCGAACCG ACTCGGCTGG ACAACTGCTG
GTTCCGGACC TGCGCTCTTA CCAGGCCAAC CATATCGCCA TCGATCCCAA TGATGTGCCG
ATCAATGCCA CTCTACCCTA TGCGACTCGC GACGTGCGCC CACCGGACCG GTCCGGTGTT
GTCGTGAAGT TCCCCATACG GGCGAGTTAC GGCGCGCTGT TACGTCTAGT GGATCAATCG
GGCAAGAATC TTCCGGTCGG TAGCGTCGCC ACACTCCAGA AAACCGGTGT CAGTGTCCCG
GTCGGCTACG ATGGTGAGGC CTACGTAGTC AACCTGAGCC CCCACAATCG GCTGCTTGTC
GAGCGGCCGG ATGGGCAACG CTGCATCGTT ACCTTTACGT ATCATCCCAT AGCCGGCACG
ATTCCATCGA TTGGCCCCCT AACCTGCCGG AAGGACGGAC CATGA
|
|---|
| Protein sequence | MTSRSGLLAV HDQSRSFAIR FAAAIVVALI LMGAAQRAIA GGGETLLLSV VVNGYHTGKI
GEFRLNKGTL RARPQELHDL GFKVPKSIPV GTDGRVALSE LPDFAWHIDQ ATQTLYVTVG
SKRLLPQLLH TETSPASELP VQSGLGATLD YDVTGTSVAG QKLGAGQFNF RAFSPWGVAS
SGLLAYVGGG PQGLGTNAVI RLNSTYTYSD PETLRRYRVG DFITGGLSWT RPVRLGGIQI
SSDFSMRPDL ITFPLPGVSG TVAVPSTVNV LVNGMQVLSS QVRPGPFEIP QVPMITGAGT
VVTTVTNALG QQVTTTLPFY ASANLLAPGL QTFSAGLGFV RLNWGFLSND YGPLAGSITF
RRGLTDALTV EAHAEGTRGV AMAGGGIVVN IDNRGVLNLS AAGSTSQGHT GAQFSVGVQR
IGRVFSAGAS AIFADPDFRD IAAMNGDPVP TRQISANVGL SLGRFGSFGI SYAGIDRNAA
SMPIPVYAPP GTVVTEGGAP VSVYYFLPAE HAHILSASYS LQIGPVSFYA TGYHDFANSG
DSGVQMGVTI PLGSRSSIGG SLASSSGNDS AQVQLMQSPV TIGDWGYQAY ATTGRTSQEF
GQLQYKSPWG LVSAGASRID RQTLVQGEVR GALSFMDGGL FASNTINNSF AIVDTDGFGN
IRVLDENRLV GRTDSAGQLL VPDLRSYQAN HIAIDPNDVP INATLPYATR DVRPPDRSGV
VVKFPIRASY GALLRLVDQS GKNLPVGSVA TLQKTGVSVP VGYDGEAYVV NLSPHNRLLV
ERPDGQRCIV TFTYHPIAGT IPSIGPLTCR KDGP
|
|---|
| |