Gene AFE_0007 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAFE_0007 
Symbol 
ID7136858 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidithiobacillus ferrooxidans ATCC 23270 
KingdomBacteria 
Replicon accessionNC_011761 
Strand
Start bp9620 
End bp12064 
Gene Length2445 bp 
Protein Length814 aa 
Translation table11 
GC content60% 
IMG OID643528425 
Productouter membrane usher protein, putative 
Protein accessionYP_002424522 
Protein GI218665167 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3188] P pilus assembly protein, porin PapC 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGACCAGTC GGTCCGGGTT GTTGGCAGTC CATGATCAAT CGCGCTCCTT CGCGATACGG 
TTCGCCGCCG CGATCGTCGT CGCGCTGATC TTGATGGGTG CGGCACAGAG GGCAATAGCT
GGCGGTGGTG AGACGCTGCT GCTCTCCGTA GTGGTCAACG GCTACCATAC GGGCAAGATT
GGCGAGTTTC GGTTGAACAA AGGCACGTTG CGCGCTCGGC CACAAGAGTT GCATGATCTT
GGCTTCAAGG TTCCCAAGTC CATTCCGGTC GGGACGGATG GCCGCGTCGC CTTGTCCGAA
CTTCCCGACT TTGCTTGGCA TATCGATCAG GCCACGCAGA CGCTTTACGT CACGGTGGGC
AGCAAACGGC TCTTGCCTCA ACTCCTGCAC ACCGAAACAA GCCCTGCCAG CGAGCTTCCG
GTGCAAAGCG GCCTTGGGGC GACCCTCGAC TACGATGTCA CCGGCACTTC GGTCGCAGGC
CAGAAACTGG GTGCCGGGCA ATTCAACTTC CGGGCCTTCT CGCCTTGGGG TGTGGCAAGT
TCGGGTCTGT TGGCCTATGT CGGCGGCGGC CCTCAGGGCC TGGGAACAAA CGCCGTAATA
CGCCTGAACA GCACCTATAC CTATTCGGAT CCGGAAACAC TGCGCCGCTA TCGCGTCGGG
GACTTCATTA CCGGTGGTTT GAGCTGGACC CGTCCGGTCC GCCTGGGTGG CATACAAATC
AGCTCAGACT TCTCTATGCG ACCTGATCTA ATTACCTTCC CATTGCCCGG CGTCAGCGGA
ACCGTCGCCG TTCCCTCGAC GGTCAACGTG CTGGTCAACG GCATGCAGGT GCTTTCGAGC
CAGGTGCGGC CCGGTCCCTT CGAGATCCCG CAGGTCCCGA TGATCACTGG TGCCGGAACG
GTGGTGACGA CGGTGACCAA TGCGCTCGGG CAACAGGTCA CTACGACCCT GCCGTTCTAT
GCCAGTGCGA ATCTGCTTGC GCCTGGACTG CAGACCTTCT CGGCCGGGCT TGGATTCGTG
CGGCTCAACT GGGGTTTCCT CAGCAACGAC TATGGCCCAT TGGCCGGATC CATAACCTTT
CGCCGTGGCC TCACGGACGC GCTGACGGTG GAAGCCCATG CCGAAGGTAC GCGGGGAGTG
GCCATGGCAG GCGGCGGTAT CGTGGTGAAT ATCGACAATC GTGGCGTACT GAATCTTTCC
GCCGCAGGCA GTACATCTCA AGGGCACACC GGTGCGCAGT TCTCCGTCGG GGTCCAGCGC
ATCGGCCGTG TTTTCAGCGC TGGCGCCTCG GCGATCTTTG CCGATCCCGA CTTTCGCGAT
ATAGCAGCAA TGAACGGAGA TCCGGTCCCG ACGCGCCAGA TCAGTGCCAA CGTCGGTCTG
TCCCTCGGCC GTTTCGGCTC CTTTGGTATC AGCTATGCCG GTATCGACCG TAATGCCGCA
TCGATGCCAA TCCCGGTATA CGCTCCACCC GGAACCGTGG TGACGGAAGG CGGGGCGCCC
GTAAGCGTAT ATTATTTCCT GCCTGCCGAA CACGCTCATA TCCTTTCGGC CAGCTATTCG
CTGCAGATTG GCCCAGTATC GTTCTACGCC ACGGGCTACC ATGATTTCGC CAATAGTGGC
GACAGTGGTG TGCAGATGGG AGTGACCATT CCGCTCGGCA GCCGGAGCTC GATCGGGGGT
AGTCTGGCAT CCTCTTCGGG AAACGATTCC GCTCAGGTGC AGCTCATGCA GTCCCCGGTC
ACGATCGGGG ACTGGGGCTA TCAGGCCTAC GCCACCACTG GCCGGACCAG CCAGGAATTC
GGCCAGTTGC AATACAAGTC GCCCTGGGGA CTTGTTTCGG CGGGCGCCAG TCGGATCGAC
CGGCAAACCC TGGTGCAGGG CGAGGTACGG GGCGCTCTTT CTTTTATGGA TGGCGGATTG
TTCGCGTCCA ACACCATCAA CAACAGCTTT GCCATCGTTG ATACCGATGG TTTCGGAAAT
ATTCGCGTCC TGGACGAGAA TCGGTTGGTT GGGCGAACCG ACTCGGCTGG ACAACTGCTG
GTTCCGGACC TGCGCTCTTA CCAGGCCAAC CATATCGCCA TCGATCCCAA TGATGTGCCG
ATCAATGCCA CTCTACCCTA TGCGACTCGC GACGTGCGCC CACCGGACCG GTCCGGTGTT
GTCGTGAAGT TCCCCATACG GGCGAGTTAC GGCGCGCTGT TACGTCTAGT GGATCAATCG
GGCAAGAATC TTCCGGTCGG TAGCGTCGCC ACACTCCAGA AAACCGGTGT CAGTGTCCCG
GTCGGCTACG ATGGTGAGGC CTACGTAGTC AACCTGAGCC CCCACAATCG GCTGCTTGTC
GAGCGGCCGG ATGGGCAACG CTGCATCGTT ACCTTTACGT ATCATCCCAT AGCCGGCACG
ATTCCATCGA TTGGCCCCCT AACCTGCCGG AAGGACGGAC CATGA
 
Protein sequence
MTSRSGLLAV HDQSRSFAIR FAAAIVVALI LMGAAQRAIA GGGETLLLSV VVNGYHTGKI 
GEFRLNKGTL RARPQELHDL GFKVPKSIPV GTDGRVALSE LPDFAWHIDQ ATQTLYVTVG
SKRLLPQLLH TETSPASELP VQSGLGATLD YDVTGTSVAG QKLGAGQFNF RAFSPWGVAS
SGLLAYVGGG PQGLGTNAVI RLNSTYTYSD PETLRRYRVG DFITGGLSWT RPVRLGGIQI
SSDFSMRPDL ITFPLPGVSG TVAVPSTVNV LVNGMQVLSS QVRPGPFEIP QVPMITGAGT
VVTTVTNALG QQVTTTLPFY ASANLLAPGL QTFSAGLGFV RLNWGFLSND YGPLAGSITF
RRGLTDALTV EAHAEGTRGV AMAGGGIVVN IDNRGVLNLS AAGSTSQGHT GAQFSVGVQR
IGRVFSAGAS AIFADPDFRD IAAMNGDPVP TRQISANVGL SLGRFGSFGI SYAGIDRNAA
SMPIPVYAPP GTVVTEGGAP VSVYYFLPAE HAHILSASYS LQIGPVSFYA TGYHDFANSG
DSGVQMGVTI PLGSRSSIGG SLASSSGNDS AQVQLMQSPV TIGDWGYQAY ATTGRTSQEF
GQLQYKSPWG LVSAGASRID RQTLVQGEVR GALSFMDGGL FASNTINNSF AIVDTDGFGN
IRVLDENRLV GRTDSAGQLL VPDLRSYQAN HIAIDPNDVP INATLPYATR DVRPPDRSGV
VVKFPIRASY GALLRLVDQS GKNLPVGSVA TLQKTGVSVP VGYDGEAYVV NLSPHNRLLV
ERPDGQRCIV TFTYHPIAGT IPSIGPLTCR KDGP