Gene AFE_0004 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAFE_0004 
Symbol 
ID7135378 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidithiobacillus ferrooxidans ATCC 23270 
KingdomBacteria 
Replicon accessionNC_011761 
Strand
Start bp4784 
End bp8290 
Gene Length3507 bp 
Protein Length1168 aa 
Translation table11 
GC content63% 
IMG OID643528422 
Producthypothetical protein 
Protein accessionYP_002424519 
Protein GI218667844 
COG category[R] General function prediction only
[E] Amino acid transport and metabolism 
COG ID[COG0493] NADPH-dependent glutamate synthase beta chain and related oxidoreductases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACTCGGG AGATCCTGGT GCTTAATTTA CTAAACTTTG AATATAAAGA ACTTTTTACT 
TCTGAAGGGC TCGCGCGGCT GGATGGGGAA TTTCTTCGTG TCCTGGCGGA AAAAGACCAG
ACCCTGGTGG AAGACCTGCA GGTATATCGT GCCGCCGGAG CGCGGCCTGC GGATAAAGCC
CAGAGCGAGT TTCTGCTGCG GCTTGCGCCG CACCTGGAAC GATTTGTCGC GCAGCTCTTC
CACCTGGGGT CGGAAGTGGC GGCGTTGCAG GCCCGGACCC GCAGTCATGA CGTAGTCATG
GCGTTCAAAA AGCATTTCGT GTTGCGCCGC GCGCGCCGTT ACCGGGGCGA ATTCCCCGAA
TCCTTTGCCG ATCTGGATCA GTGGTTGGAC AGCGAAATCC GGCAGCGTGG CTGGCCGCTG
GAAGATCGCG AATGGGCCAT TGCCCGGCTG GGTGAAGCAT GGCTCGAGGA TGAAGCGGCT
CATGCCGTGG CCATCGACCG TCTGACCCGG TGGTGTGCCC GCATCCTGAG TGATCCACAG
GCCGCCCTGG CGGTGCAGGG CTGGTCCAGT TTCCGTCTCC CCCAACGAGT GGACCACGAG
GCGCTGGTAC CCTTGAAACG TCGGGAGGAT CTCCCCGGTG CACCCTTCGT GGCGCCGGAC
GGCACCCTGC GGCGCCGCGA CAGCTTTCAT CTGACCGATC TGCGTATGGA CGCCCGCAGC
GTCCAGAATG AAGTCCATTA TTGTTTGTAC TGCCATGATC ACGAAGGTGA TTTTTGTTCC
AAGGGCTTTC CGGAGAAAAA GGGCGTGCCG GAACTGGGTC TCAAGGTGGA CCCCCTGGGC
GTCACCCTGA CAGGCTGTCC CCTGGAAGAA AAAATCTCCG AGATGCAGGT ACTGAAGCGG
GACGGATTCC ATATCGCCGC CCTGGCCATG GCCATGGTGG ACAACCCCAT GGTCCCCGCC
ACCGGACACC GCATCTGCAA CGACTGTATG AAGGCCTGCG TCTACCAGAA GCAGGATCCG
GTGAACATCC CGCAGATTGA AACGCGGATC CTCACGGATG TGTTGAATCT GCCCTGGGGC
GTGGAACTCT ACGATCTGCT GACCCGCTGG AACCCGTTGC GCGCCGTGCA ATACTTGGCG
CAGCCCTATA ACGGGCGCAA GGTACTGGTG GCGGGCATGG GCCCGGCTGG CTTCACCATG
GCCCATCATC TCCTGCAGGA AGGTTGTGCG GTGGTGGGTA TCGATGGCCT GAAAGTCGAA
CCCCTGCCCC GGCAGTGGCT GGAGCAGCCC ATCCGCGACT GGAGCCATCT CCAGGAGGAC
CTCGACGAAC GCATTCTGCT CGGGTTTGGC GGTGTGGCCG AATATGGCAT TACCGTGCGC
TGGGACAAGA ATTTTCTCAA GTTGATCTAC CTGACCCTGG CGCGGCGCTC GAATTTCCAG
ATTTTCGGCG GCGTACGGCT GGGCGGGACC ATCACCCTCG AAAACGCCTG GGAACTGGGT
TTCGATCATG TCTGCATCGC TACCGGCGCG GGTCTGCCGC GGGTGGTGCC CATGGGCGAG
AGTCTGGCGC GCGGTATGCG TCAGGCCAGC GACTTCCTCA TGGCGCTGCA GCTCACCGGA
GCGGGCAAGC GGTCCAGTCT CGCCAATCTG CAGGTACGCC TGCCGGCGGT GGTGATTGGC
GGTGGCCTCA CGGCGGTGGA TACCGCCACC GAGGTACAGG CCTATTATGT GCGGCAGGTA
GAGAAGGTGC TGGCGCGCTA CGAAGCGATG GTGACCCATT CCGGAGAAGA AAAACTCCGC
GCCGGACTCT CCGCCGAGGA TGCCGGGATT CTCGACGAGT TCCTGACCCA CGGCCGCGCC
GTGCGTGCCG AGCGCGAGCG CGCCGCAGCA GGGAACGAAT CGCCCAATTT CGTGCCGCTG
ATCCAGTCCT GGGGCGGCGT CACCCTGGCA TACCGGAAGG GGATGCAGCA GGCACCCGCC
TATACCCGCA ACCATGAAGA ACTCATCAAG GCCATGGAAG AAGGGATCTA TTATGGTGAG
GGTCTCGATC CTCTCCGGGC AGAATTAGAT AGCTATGGGC ATATCGCGCA CATGGTCTTC
CGCCAAATGC GCGAGGTGGA AGGGCGCTGG CTGGCCAGCG ATCAGGACGT GCGGCTTCCC
GCGCGGGCCG TCTTCATTGC CGCCGGCACT GTCCCCAACA CCATCTATGA AAGGGAATAT
CCGGGGACTT TCCAACTGGA CGGGGACCAC TTCCTGACCC ATGTGGCCCA CGACAACGGG
CCGTTGCAAG CGGTGCAGGT GGCCGAGCAC TGCAAAGCCC CCGAGGCCGG TCCCTTTACT
TCCTATGGTG ATGCGCAGGG ACACCGGATC AGTTTTATTG GGGATACCCA CCCGGTCTTC
CACGGCAGCG TGGTCAAGGC CATCGCCTCG GCCAAGGCGA CGTATCCGCA GGTCATGCAG
AGCCTGGGGA CGCTGGATAC CGCCGTGGAT CCCGACGTGC ATGGCTTTCA GCAACGGTTG
CAGCATCTGC TGAGCATGCG GGTACTCCGC ATGGATCGCA GCAACCCCGC CGTCACCGAG
ATGTGGGTGG AAGCCCCGCT GGCGGCCCGC AATTTCCGGC CGGGACAGTT TTTCCGTTTG
CAGACCTTCG AGAGTCACAG CCCGATCGTG GACGGTACCC GCCTGCAGAT ACCGGTGCTG
ACGGTCAGCG GTGCAGGGGT GGAAGGCGAC GCGGTGCGCC TCATGATCCT GCAGTGGGGC
ACCGGACCGC GTCTGGTGGG ACGTTTGCAG CCGGGCGACC CTCTGATACT CATGGGACCG
ACCGGCGCGC CCACCGACAT CCCCAGCGGC AAGACCATAC TGGTGGTCGC GGGACGCTGG
GGTGCGGCGG TGATGCTGGA TATCGGCCCG GCCTTGCGGG CGGCGGGCAA CCGCGTGCTC
TATGTGGCGG CATTGGGCAA AGCCAGCGAA CTGGATCACC AGGCGGAGCT GGAAGAAGCC
GCGGACCAGA TCATCTGGTG TACGGGCAGC GGCTCGTTGA TCGAGACCCA CCGCCAGCAG
GACCTCAGTG TCGAGGCCTC TGACATGGTC GCCTTGTTGC GGGCCTATGG GGCCGGGGAG
TTGCCGGGGC AAAAGGCCCA TGGGATGGAG ATCGCCCTGA ACAGTGTGGA TCGCCTGATG
GTCATGGGGT CCACCGGCCT GCTCAAGGCC TTTCAGCAGG CCCTCCAGGG GGAGCTACAG
CCCTATTTCC GGGCCGATCT GGAGGCTACG GCGACGGTGG GCAGTCCCAT GCAGTGTATG
CTCAAAGGCG TCTGCGCCCA GTGTCTGCAA TGGCAGATCG ACCCCGAAAC GGGACAGCGC
ACCAAGGCGG TATTTTCCTG CGCCCAGCAG GATCAGCCCC TGGCCTGGGT GGATCTGGAC
AACCTGACCG CCCGCCAGAG TCAGAATCGC TTGCTGGAAA GACTCTCCAG TCAGTGGCTG
GATCACCTAA CGTTCAGGGG AATATGA
 
Protein sequence
MTREILVLNL LNFEYKELFT SEGLARLDGE FLRVLAEKDQ TLVEDLQVYR AAGARPADKA 
QSEFLLRLAP HLERFVAQLF HLGSEVAALQ ARTRSHDVVM AFKKHFVLRR ARRYRGEFPE
SFADLDQWLD SEIRQRGWPL EDREWAIARL GEAWLEDEAA HAVAIDRLTR WCARILSDPQ
AALAVQGWSS FRLPQRVDHE ALVPLKRRED LPGAPFVAPD GTLRRRDSFH LTDLRMDARS
VQNEVHYCLY CHDHEGDFCS KGFPEKKGVP ELGLKVDPLG VTLTGCPLEE KISEMQVLKR
DGFHIAALAM AMVDNPMVPA TGHRICNDCM KACVYQKQDP VNIPQIETRI LTDVLNLPWG
VELYDLLTRW NPLRAVQYLA QPYNGRKVLV AGMGPAGFTM AHHLLQEGCA VVGIDGLKVE
PLPRQWLEQP IRDWSHLQED LDERILLGFG GVAEYGITVR WDKNFLKLIY LTLARRSNFQ
IFGGVRLGGT ITLENAWELG FDHVCIATGA GLPRVVPMGE SLARGMRQAS DFLMALQLTG
AGKRSSLANL QVRLPAVVIG GGLTAVDTAT EVQAYYVRQV EKVLARYEAM VTHSGEEKLR
AGLSAEDAGI LDEFLTHGRA VRAERERAAA GNESPNFVPL IQSWGGVTLA YRKGMQQAPA
YTRNHEELIK AMEEGIYYGE GLDPLRAELD SYGHIAHMVF RQMREVEGRW LASDQDVRLP
ARAVFIAAGT VPNTIYEREY PGTFQLDGDH FLTHVAHDNG PLQAVQVAEH CKAPEAGPFT
SYGDAQGHRI SFIGDTHPVF HGSVVKAIAS AKATYPQVMQ SLGTLDTAVD PDVHGFQQRL
QHLLSMRVLR MDRSNPAVTE MWVEAPLAAR NFRPGQFFRL QTFESHSPIV DGTRLQIPVL
TVSGAGVEGD AVRLMILQWG TGPRLVGRLQ PGDPLILMGP TGAPTDIPSG KTILVVAGRW
GAAVMLDIGP ALRAAGNRVL YVAALGKASE LDHQAELEEA ADQIIWCTGS GSLIETHRQQ
DLSVEASDMV ALLRAYGAGE LPGQKAHGME IALNSVDRLM VMGSTGLLKA FQQALQGELQ
PYFRADLEAT ATVGSPMQCM LKGVCAQCLQ WQIDPETGQR TKAVFSCAQQ DQPLAWVDLD
NLTARQSQNR LLERLSSQWL DHLTFRGI