| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mchl_3256 |
|---|
| Symbol | |
|---|
| ID | 7117595 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium chloromethanicum CM4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011757 |
|---|
| Strand | - |
|---|
| Start bp | 3436758 |
|---|
| End bp | 3438290 |
|---|
| Gene Length | 1533 bp |
|---|
| Protein Length | 510 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 643526006 |
|---|
| Product | threonine dehydratase, biosynthetic |
|---|
| Protein accession | YP_002422021 |
|---|
| Protein GI | 218531205 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1171] Threonine dehydratase |
|---|
| TIGRFAM ID | [TIGR01124] threonine ammonia-lyase, biosynthetic, long form |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.786977 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACCGACT ACATCAAGAA GATCCTCTCC GCCCGCGTCT ACGACGTGGC GATCGAGAGC
CCCCTCGATC CGATGCCCCG CCTGACGAAG CGGCTCGGCC GTCCCGTGCT GCTCAAGCGC
GAGGATCTGC AGCCGGTCTT CTCGTTCAAG CTGCGCGGCG CCTACAACAA GATGGCCTCG
CTGCCCCAAG AGCGGCTCGA GAGCGGCGTG ATCTGCGCCT CGGCCGGCAA CCACGCGCAG
GGCGTGGCCC TGGCGGCGGC CAAGCTCGGC GTGCGGGCGG TGATCGTGAT GCCGCGCACG
ACGCCCGCGA TCAAGGTCGA TGCCTGCCGG GCCCGCGGCG CCGAGGTCGT GCTGCACGGC
GACGCCTTCG ACGAGGCTCT GGCGGAGGCT CGGCGCCTCG AAGCGCAGTG GGGCCTGACC
TTCCTGCACC CGTTCGACGA TCCCGAGGTG ATCGCCGGAC AGGGTACGAT CGGCATGGAG
ATCTTGCATC AGCATACCGG ACCGATCGAG GCGATCTTCG TGCCGATCGG CGGCGGTGGC
TTGGCCGCCG GCATCGCCAC CTTCGTGAAA TATCTGCGCC CCGAGACCAA GGTGATCGGC
GTCGAGCCGG ACGACGCCGC CACCATGTCC GAGGCGCTCC GGGCGGGCGA CCGGGTGATG
CTGCCGAGCG TCGGGCTGTT CGCCGACGGC GTCGCGGTGC GGCAGGCCGG CGAGGAGACC
TTCCGGCTGT GCCGCGAGCA TCTCGACGCG GTCATCACCG TCGATACCGA TGCGATGTGC
GCCGCGGTCA AGGACATCTT CGACGATACC CGCGCTATCT CCGAGCCGTC GGGCGCGCTG
AGTCTGGCCG GCGCGAAGGC TTGGTCGGCG AAGAATCCCG GTGCCGGGCC GCTGGTGGCG
ATCTCGTCGG GCGCCAACCT CAACTTCGAC CGCCTGCGCC ACATCGCCGA GCGGGCGGAG
ATCGGCGAGG AACGCGAGGT GTTGCTCGGC GTCACCATCC CCGAACGGCC GGGCGCCTAC
CGCGCCTTCA TCGGCGCGCT CGGGCCCCGC GCGATCACCG AATTCAACTA CCGCTACGCG
CAGGGCAGCG ACGCGCGCAT CTTCGTCGGC ATCAACCTGC CCGGCGGCAA GCCCGAGAAG
CGCGACCTGA TCGCGGCCCT GGAGAGCGCC GGCTACCGCG TCGCCGATAT GAGCGACAAC
GAGATGGCCA AGGTGCATGT CCGCTACATG GTGGGTGGAC GCGCGGCGGG GCTCGCCGAC
GAGCGGCTCT ACCGCTTCCA GTTCCCCGAG CGGCCCGGCG CGCTGATGAA GTTCCTCGAA
GCGCTCGGCG ACGGCTTCAA CATCAGCTTG TTCCACTACC GCAATCACGG CGCCGATTAC
GGCCGCGTGC TCGCGGGGAT CGAGGTGCCG GCGGCGGAGC GCGCCCGTTT CGACGCCGCC
CTCGAAGCGC TCGCCTATCC CTATGTCGAT GAGACCGACA ACCCGGCTTA CCGGCTGTTC
CTCGACAACG GCATCGGCGC AGCCGGCCAC TGA
|
|---|
| Protein sequence | MTDYIKKILS ARVYDVAIES PLDPMPRLTK RLGRPVLLKR EDLQPVFSFK LRGAYNKMAS
LPQERLESGV ICASAGNHAQ GVALAAAKLG VRAVIVMPRT TPAIKVDACR ARGAEVVLHG
DAFDEALAEA RRLEAQWGLT FLHPFDDPEV IAGQGTIGME ILHQHTGPIE AIFVPIGGGG
LAAGIATFVK YLRPETKVIG VEPDDAATMS EALRAGDRVM LPSVGLFADG VAVRQAGEET
FRLCREHLDA VITVDTDAMC AAVKDIFDDT RAISEPSGAL SLAGAKAWSA KNPGAGPLVA
ISSGANLNFD RLRHIAERAE IGEEREVLLG VTIPERPGAY RAFIGALGPR AITEFNYRYA
QGSDARIFVG INLPGGKPEK RDLIAALESA GYRVADMSDN EMAKVHVRYM VGGRAAGLAD
ERLYRFQFPE RPGALMKFLE ALGDGFNISL FHYRNHGADY GRVLAGIEVP AAERARFDAA
LEALAYPYVD ETDNPAYRLF LDNGIGAAGH
|
|---|
| |