Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PCC7424_5143 |
Symbol | dapF |
ID | 7108042 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cyanothece sp. PCC 7424 |
Kingdom | Bacteria |
Replicon accession | NC_011729 |
Strand | - |
Start bp | 5713605 |
End bp | 5714450 |
Gene Length | 846 bp |
Protein Length | 281 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 643483352 |
Product | diaminopimelate epimerase |
Protein accession | YP_002380361 |
Protein GI | 218442032 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0253] Diaminopimelate epimerase |
TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 1 |
Fosmid unclonability p-value | 2.75804e-23 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGGCATCG AATTTACAAA GTATCATGGT TTAGGTAATG ATTTTATCTT AATAGATAAT CGTCACGGTT CAGAGCCGAT GGTTTCTCCC GAAATGGCTG TCGAGATGTG CGATCGACAT TTTGGCATTG GGGCGGATGG GGTGATTTTT GTGTTGCCGG GAACGTCACA GACAGATTAT CAGATGCGAA TCTTTAATAG TGATGGTTCA GAACCGGAAA TGTGTGGGAA TGGAATTCGC TGTTTAGCCC AATTTATTGC CGAGTTAGAA AAAACGACTG AAGTCGGAAA ATCTTACCGA ATTGATACGT TAGGGGGGTT AATGACTCCT CGCTTAGAAG CCCAAGAACA AGTTACCGTA GATATGGGAC TTCCTCGCCT TTTAGGGTCA GAAATTCCCA CAACTTTAGT CTCCAGAACA GAAAAGGTTA TTGATCAACC TATAGAAGTG GCCGGTCAAT CTTGGTTAGT GACTTGTGTG AGTATGGGCA ATCCTCACTG TATCACTTTT GTTGAGGATG TTAAGAGTAT TGCTTTAGAA ACGATCGGCC CTCAATTTGA ACATCATGTC GCATTCCCCC AAAGAACCAA TACTGAATTT ATCGAGGTGC TACGTCCTGA TTATTTAAAA ATGCGGGTTT GGGAAAGAGG CGCTGGTATT ACTTTAGCTT GTGGGACGGG GGCTTGTGCT TCTGTGGTGG CTGGAGTGTT GACGGGTAAA AGCGATCGCC GGTGTACGGT AGAATTACCG GGAGGTTGTC TGAGTATTTA TTGGTCAGAA ACCGATGGTC ATGTTTATAT GACTGGGCCG GCTAAACGGG TGTTTACTGG GGTTTATGAG ATGTAG
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Protein sequence | MGIEFTKYHG LGNDFILIDN RHGSEPMVSP EMAVEMCDRH FGIGADGVIF VLPGTSQTDY QMRIFNSDGS EPEMCGNGIR CLAQFIAELE KTTEVGKSYR IDTLGGLMTP RLEAQEQVTV DMGLPRLLGS EIPTTLVSRT EKVIDQPIEV AGQSWLVTCV SMGNPHCITF VEDVKSIALE TIGPQFEHHV AFPQRTNTEF IEVLRPDYLK MRVWERGAGI TLACGTGACA SVVAGVLTGK SDRRCTVELP GGCLSIYWSE TDGHVYMTGP AKRVFTGVYE M
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