| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PCC7424_3738 |
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| Symbol | |
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| ID | 7111472 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cyanothece sp. PCC 7424 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011729 |
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| Strand | + |
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| Start bp | 4157511 |
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| End bp | 4161017 |
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| Gene Length | 3507 bp |
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| Protein Length | 1168 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 643481968 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_002378987 |
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| Protein GI | 218440658 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 54 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACATTTG ACTCCGTAAT TCGTGCCATC GGGCGATCGC CTCTGACAAC CGAACTCCTC
AGTAAACTCC AACGGCATCA AACCCTACAG TTAAGCGGGA TACCTCGTTT ACCCAAAGGA
TTAATCGCCT CTAGTTTGGC ACAAATTCAA AGTCATAACC TCTTAATTAT TTGTCCTACC
CTAGAAGAAG CCGGGCGCTG GGCGACACAA CTAGAAGCGA TGGGATGGAA AACCGTTCAT
TTTTATCCCA CCTCTGAAGG ATCTCCCTAT GATACCTTAA ACCCTGAATC TGAGATGATT
TGGGGACAAT TGCAAGTCTT ATCCGGTATT CAAACCCCCG AAGCGATCGC TACCAGTGAA
CCGGAAACGA CAAAACAATT ATATGCTATC GTCACCACAG AAAAAGCCTT ACAGCCGCAT
CTACCCCCAC CGAATAAATT GTATTCCTAT TGCCTCAATT TTCAACAAGG AATGACTCTA
GAGGCAAAAA CATTAGACCA AAATTTAACG CAACTGGGAT ATGAACGGGT TAATTTAGTA
GAAACCGAAG GACAATGGAG TCGTAGAGGG GATATCGTCG ATATTTTCCC CGTTTCAGCC
GAACTCCCCG TCAGATTAGA ATGGTTTGGA GATGAATTAG AACAACTGCG AGAATTTGAT
CCCTCTACTC AACGATCCTT GGATCATATT ACTCAACTGA CATTAACTCC CATCAGTTTT
TTCCCGATTA TTACCGATGA AATTTTAAGG TCTGAAAATC TCTTATCTTC TTATTTATCC
TCAGAAGAAT TAGAAGGATT AGACAATCGA AATTTTCCCG AAGGAATGCA GCGATTTTTA
GGGCTTGCCT TCCCACAACC CGCCTCATTA CTAAACTATT TACCGTCCAA TACTCTCTGT
GTTTTTGATG AAATAGAACG ATGTCAGGCA CATAGCGATC GCTGGATAGA ATATATCGAA
GAACAATGGC AAGATCTCGA TCCACCCTTA CCTAAAATTC ATCGAATTTT TAGAGACTCT
CTAGAAATTG CCAAAGAATT TTCTAACCTT TATCTAACAG AAATTACCGA AGAAAGTTCC
GCCTCATCAA TTCCTAATAT CGATTTATCC AGTCGTCCCC TTCCGGTTAC CCCGAATCAA
TTTGCTAAAT TAGCAGAAAT TTTACGAGGA AAGAGAGAAA TATATAGCGG AATTAGCCTG
AATAAATATG CCATTTGGTT AGTATCCGCC CAACCGTCTA GAACCGTTTC CTTATTAGAA
GAACATGATT GTCCCGCGCA ATTTATCCCT AATCCAAAAG ACTATTTAGC CATTGATAAA
TATCAAACTC AAACCACCGC AGTTGCCCTT AAATACTCAG GATTAGCAGA ATTAGAAGGA
TTTATTTTAC CCACATTTAG AATAGTTGTT GTTACCGATA AAGAATTTTT TGGACAACAA
AGCTTAGTCA CCGGTTCCTA TATTCGTAAA CGTCGCCGGG CAGCCTCGAA ACAAGTCAAT
CTCGATAAAT TAAGACCCGG TGATTATGTC GTACATCGGA ATCATGGCAT CGGTAAATTT
ATCAAATTAG AAATATTAGA ATCGAGAGAA TATATCCTCA TTCAATATGC CGATGGAACA
TTACGAATTC CCTCAGATTC TCTAGACAGT TTATCCCGTT ATCGCCACAC CAGCAATACC
CCACCTCAAC TGGATAAAAT GACGGGAAAA ACTTGGGAGC AAACCAAACA AAAAGTTAGG
AAAACCGTTA AAAAATTAGC AGTAGACTTA ATCAATCTCT ACGCCAAACG CGCCCAACAA
GAAGGATTTG CTTATCCCGA TGATAGCCCC TGGCAACAAG AATTAGAAGA CTCATTTCCC
TATCAACCCA CTCCCGATCA AATTAAAGCC ATTCAAGAAG TTAAACGGGA TATGATGAAC
GAGCGCCCGA TGGATCGGTT AGTCTGTGGT GATGTAGGAT TTGGGAAAAC CGAAGTAGCG
GTCAGGGCTA TTTTTAAAGC CGTCACCAGT GGCAATAAAC AGGTTGCCTT TCTTGCGCCA
ACAACCATTT TAACCCAACA ACATTACCAC ACTCTTAAAG AAAGATTTGC CCCTTATCCG
ATTAACATTG GATTACTCAA CCGCTTTCGT ACCCCATCAG AAAATAGAGA TATATTACAA
CGTCTTGCCA CAGGAGAATT AGATATAGTA GTCGGAACTC ATCAACTCCT AAGTAACAAA
GTTAAATTCA AAGACTTAGG ACTATTAGTC ATCGATGAAG AACAAAGATT TGGAGTTAAC
CAAAAAGAAA AAATTAAAAC CCTCAAAACC CAAGTTGACG TTCTAACCTT AACCGCAACA
CCCATTCCTC GAACCCTATA TATGTCCCTT TCAGGAGTAA GAGAAATGAG TTTAATTACC
ACACCTCCTC CCTCCCGTCG CCCCATCAAA ACCCATTTAA CCCCTTATAA CCCAGATGCC
CTCAGAACCG CCATCCGTAA CGAATTAGAC CGGGGAGGAC AAATCTTTTA TGTCGTTCCC
AGAGTCGAAG GAATCGAAGA AGTAGCCGCA GAAATTCGAG ACATGATTCC CACCGCCCGA
ATTGCGATCG CTCACGGACA AATGAGCGTA TCCGAATTAG AACCCACCAT GTTAGCCTTT
AACAATGGGG AAGCGGATAT ATTAGTCTGT ACAACCATTA TTGAATCGGG CTTAGATATT
CCCAGAGTTA ATACTATTAT TGTCGAAGAC GCGCAAAAAT TCGGATTATC CCAACTCTAT
CAACTCCGGG GACGGGTAGG ACGCTCCGGA ATACAGGCTC ATGCGTGGTT AGTCTATCCC
CACAAAGCCG CCTTAACCGA AACCGCCCGG CAACGGTTAC GCGCCTTACA AGAATTTACC
CAACTCGGAT CAGGGTATCA ACTCGCTACT AGAGACATGG AAATTCGAGG CGTAGGAAAC
CTATTAGGTG CTGAACAATC CGGACAAATG GAGGCCATCG GATTTGATTT ATATATGGAA
ATGTTACAAG AAGCGATCCG AGAAATTCAA GGTCAAGAAA TTCCCAAAGT AGAAGACACC
CAAATCGATT TAAAATTAAC CGCGTTTATT CCTACCGATT ATATTACCGA TGCGAATCAA
AAAATGGATG CTTACCGCAC TATTGCAACG GCTAATTCCC CCGCAGAATT AAAACAAATT
GCGACGGATT TATGCGATCG CTACGGGGCT TTACCCTCTC CCGTTGAACA ATTATTACAG
GTCATAGAAT TAAAACAACT CGCTAAATCT TTAGGTTTTT CTCGGATTAA ACCCGATGGA
AAACAGCACG TTATTTTAGA AACTCCGATG GAAGAACCGG CTTGGAAATT GTTAGAAGAA
AATTTACCAA AACATTTGCG ATCGCGGTTT GTTTATAGCC TGAAGAAAGT GACGGTTAGA
GGGTTAGGGG TATTGAAACC GAAGAAACAG TTGGAGAGTT TAATTGAGTG GTTGGGGAAG
ATGAAGGGGG CATTACCAGA GGGTTAA
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| Protein sequence | MTFDSVIRAI GRSPLTTELL SKLQRHQTLQ LSGIPRLPKG LIASSLAQIQ SHNLLIICPT
LEEAGRWATQ LEAMGWKTVH FYPTSEGSPY DTLNPESEMI WGQLQVLSGI QTPEAIATSE
PETTKQLYAI VTTEKALQPH LPPPNKLYSY CLNFQQGMTL EAKTLDQNLT QLGYERVNLV
ETEGQWSRRG DIVDIFPVSA ELPVRLEWFG DELEQLREFD PSTQRSLDHI TQLTLTPISF
FPIITDEILR SENLLSSYLS SEELEGLDNR NFPEGMQRFL GLAFPQPASL LNYLPSNTLC
VFDEIERCQA HSDRWIEYIE EQWQDLDPPL PKIHRIFRDS LEIAKEFSNL YLTEITEESS
ASSIPNIDLS SRPLPVTPNQ FAKLAEILRG KREIYSGISL NKYAIWLVSA QPSRTVSLLE
EHDCPAQFIP NPKDYLAIDK YQTQTTAVAL KYSGLAELEG FILPTFRIVV VTDKEFFGQQ
SLVTGSYIRK RRRAASKQVN LDKLRPGDYV VHRNHGIGKF IKLEILESRE YILIQYADGT
LRIPSDSLDS LSRYRHTSNT PPQLDKMTGK TWEQTKQKVR KTVKKLAVDL INLYAKRAQQ
EGFAYPDDSP WQQELEDSFP YQPTPDQIKA IQEVKRDMMN ERPMDRLVCG DVGFGKTEVA
VRAIFKAVTS GNKQVAFLAP TTILTQQHYH TLKERFAPYP INIGLLNRFR TPSENRDILQ
RLATGELDIV VGTHQLLSNK VKFKDLGLLV IDEEQRFGVN QKEKIKTLKT QVDVLTLTAT
PIPRTLYMSL SGVREMSLIT TPPPSRRPIK THLTPYNPDA LRTAIRNELD RGGQIFYVVP
RVEGIEEVAA EIRDMIPTAR IAIAHGQMSV SELEPTMLAF NNGEADILVC TTIIESGLDI
PRVNTIIVED AQKFGLSQLY QLRGRVGRSG IQAHAWLVYP HKAALTETAR QRLRALQEFT
QLGSGYQLAT RDMEIRGVGN LLGAEQSGQM EAIGFDLYME MLQEAIREIQ GQEIPKVEDT
QIDLKLTAFI PTDYITDANQ KMDAYRTIAT ANSPAELKQI ATDLCDRYGA LPSPVEQLLQ
VIELKQLAKS LGFSRIKPDG KQHVILETPM EEPAWKLLEE NLPKHLRSRF VYSLKKVTVR
GLGVLKPKKQ LESLIEWLGK MKGALPEG
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