Gene PCC7424_3296 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPCC7424_3296 
Symbol 
ID7111905 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCyanothece sp. PCC 7424 
KingdomBacteria 
Replicon accessionNC_011729 
Strand
Start bp3692049 
End bp3692654 
Gene Length606 bp 
Protein Length201 aa 
Translation table11 
GC content42% 
IMG OID643481540 
ProductRNA polymerase sigma factor 
Protein accessionYP_002378563 
Protein GI218440234 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones73 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGGAAAC AAGCAATAGT GTTGGCTGAT AATGTAGCTT GCACCCCAGA GAGTGAATTG 
ATAGTCCGAT GTCAGAGAGG CGATCGCACG GCCTTTCATC AATTGTATCG ACGCTATCAG
CAAAAGGTAA GCTCAACTTT ATACCAACTC TGTGGGCGAG AAATGTTAGA GGATCTCGTC
CAAGAAGTCT TTATTAGAGT TTGGAAAGGA CTACCCAAAT TACGTCAACC CTCCTACTTT
TCCACCTGGT TATATCGTAT CTGTTGGAAT GTAGCGGTGG ATGGACGGCG ACAATTTGCC
AAACGAAAAC AGGAAAAAAG AGAAACATCG ACGGATAAGG ATGATTTATC CAGTTTAGAA
ACCCTATTTC GTTCCCAAGA TACTCCAGAT TTAATGCAGT TACACTATCA AGATCTAGTC
CAACGGGGAC TACAAACCCT CAGTTTAGAC CATCGAGCGG TAATTGTCTT ACATGACTTA
GAAGATATTC CCCAAAAAGA AATCGCTCAA ATCTTACAAC TTCCCGTCGG TACGGTTAAA
TCTCGCTTGC ATTATGCTCG CAATGCTATT AAAAAATTTT TGCAGCAAGA AGGAGTATTA
TCATGA
 
Protein sequence
MRKQAIVLAD NVACTPESEL IVRCQRGDRT AFHQLYRRYQ QKVSSTLYQL CGREMLEDLV 
QEVFIRVWKG LPKLRQPSYF STWLYRICWN VAVDGRRQFA KRKQEKRETS TDKDDLSSLE
TLFRSQDTPD LMQLHYQDLV QRGLQTLSLD HRAVIVLHDL EDIPQKEIAQ ILQLPVGTVK
SRLHYARNAI KKFLQQEGVL S