| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PCC7424_1028 |
|---|
| Symbol | secD |
|---|
| ID | 7111616 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cyanothece sp. PCC 7424 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011729 |
|---|
| Strand | - |
|---|
| Start bp | 1132920 |
|---|
| End bp | 1134335 |
|---|
| Gene Length | 1416 bp |
|---|
| Protein Length | 471 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 643479298 |
|---|
| Product | preprotein translocase subunit SecD |
|---|
| Protein accession | YP_002376350 |
|---|
| Protein GI | 218438021 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0342] Preprotein translocase subunit SecD |
|---|
| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 0.016566 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCAAC AACGTTGGAT TTTATTATTT ATTTTTGCAT TAGTTATTGC GGCGATCGTC
TGTATAAAAA CTTTGGGTCT TCAATTAGGG TTAGACTTAA GAGGAGGGGC ACAATTAACC
ATTGCAGTTA AACCCACAGA AGAAGTAACA ACGATTAGTC AAAATGATTT ACAAGGGGTT
CAAACTGTTA TTGAAAACCG AATTAATGCT TTAGGAGTGT CTGAGTCATT AGTGCAAACT
GCCGGGGGCG ATAAAATTTT AGTTCAACTG CCTGGAGTCA CCGATCCTCA ACAAGCAGAA
CGAATTTTAG GCGGAACAGC ACAACTAGAA TTTAGGCAGC AACGACAAGG AACAGAAGGA
CAATTTCAAG CCATCTATGG AATTAAAAGG CAAACCGAAG CAGAATTAGC ACTGATTAAA
AATGAGACAA ATAACCCAGA ACAAAAAGAA AAAATAGCTC AGTTAACGAA ATCAATTCAA
AATACAAACG AAGAAATTTT AACCCTATTT GACTCCGTTG ATCTAAGCGG AAAAAACCTC
AAAGATGCCC GGCCATCTCC GACTCAGTCC GGCAATGGTT GGGAAGTGGC CATCCGGTTT
GATGACGCTG GGGGCAAAAA ATTTGCCGAA CTAACAAAAC AGTTAGCGGG TACTGGCCGC
AGTATCGGAA TATTCCTAGA CGATAACCTC ATTAGTGGCC CAGTGGTCGG GCCGGAATTT
GCAGCTACGG GAATTACGGG AGGGGCGGCA GTCATTACCG GCAACTTTAC CATTGAAACC
GCCAATGAAC TGGCCGTACA ACTGAGAGGG GGATCTTTGC CCTTTCCTGT GGAAGTCGTC
GAAAATCGTA CCGTTGGGGC AACCTTAGGA CAAGATAGTA TTAGAAGCAG TATTTATGCA
GGGATTGGAG GATTAGCGTT AGTTTTGGTG TTTATGGGGC TTTACTATCG CTTACCTGGG
GTTATTGCTG ATGTTGCTTT AGCAATTTAT ACCATCCTAA CCTTAGCCGC CTTTGCTTTA
ATTGGTGTGA CCTTAACTTT ACCCGGAATT GCCGGATTTA TTCTCAGTAT TGGGATGGCA
GTGGATGCCA ATGTCTTAAT TTTTGAACGA ACTAGAGAAG AATTACGCGC CGGTCAAACT
CTCTATCGCT CCGTTGAATC AGGGTTTTAC CGAGCGTTTT CGAGTATTCT CGATAGTAAT
GTCACCACGT TGATCGCCTG TGGTGCTTTG TTTTGGTTAG GATCGGGGTT AGTTAAAGGA
TTTGCTCTTA CCCTAGCAAT TGGGGTATTA ATTAGTATGT TTACGGCTTT AACTTGTAGT
CGTACTCTAT TATTACTCAC TGTTCTTAAT GTCCCCGGTA TCCGTCAAAA ACCTCAATGG
TTTTGTCCTA ATGTAACTAG CACAGCCAAA TCGTAA
|
|---|
| Protein sequence | MKQQRWILLF IFALVIAAIV CIKTLGLQLG LDLRGGAQLT IAVKPTEEVT TISQNDLQGV
QTVIENRINA LGVSESLVQT AGGDKILVQL PGVTDPQQAE RILGGTAQLE FRQQRQGTEG
QFQAIYGIKR QTEAELALIK NETNNPEQKE KIAQLTKSIQ NTNEEILTLF DSVDLSGKNL
KDARPSPTQS GNGWEVAIRF DDAGGKKFAE LTKQLAGTGR SIGIFLDDNL ISGPVVGPEF
AATGITGGAA VITGNFTIET ANELAVQLRG GSLPFPVEVV ENRTVGATLG QDSIRSSIYA
GIGGLALVLV FMGLYYRLPG VIADVALAIY TILTLAAFAL IGVTLTLPGI AGFILSIGMA
VDANVLIFER TREELRAGQT LYRSVESGFY RAFSSILDSN VTTLIACGAL FWLGSGLVKG
FALTLAIGVL ISMFTALTCS RTLLLLTVLN VPGIRQKPQW FCPNVTSTAK S
|
|---|
| |