Gene PCC8801_3061 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPCC8801_3061 
Symbol 
ID7105986 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCyanothece sp. PCC 8801 
KingdomBacteria 
Replicon accessionNC_011726 
Strand- 
Start bp3202402 
End bp3203358 
Gene Length957 bp 
Protein Length318 aa 
Translation table11 
GC content45% 
IMG OID643476085 
ProductRNA polymerase sigma factor SigD 
Protein accessionYP_002373198 
Protein GI218247827 
COG category[K] Transcription 
COG ID[COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02997] RNA polymerase sigma factor, cyanobacterial RpoD-like family 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACGTTT CTAAAAGTTC TCCCGATCCT GTCCGCGCTT ATTTACGAGA AATAGGTCGT 
GTTCCTCTAC TAACCCACGA AGAAGAAATC CTCTATGCTA AACGAGTACA GCGATTTGTA 
GCCTTAGAAA CCCTCAAAGA ATCCTTAACC GAAGAATTGG GACAGGAACC TACCATAGCA 
CAATGGGCTA AAGCCGCTAA AATGACTCAA AAAGAACTCC GATCTGCCAT TGAAGCGGGA 
GAAGCTGCTA AGCGGAAAAT GGTGGAAGCC AATTTACGTC TGGTAGTCTC CGTCGCTAAA 
AAGTATCTGA AGCGGAACCT AGATTTACTC GACTTAATCC AAGAGGGAAC CATTGGGATG 
CAGCGAGGGG TAGAAAAGTT TGATCCCACC AAAGGCTATC GCTTTTCGAC CTATGCTTAC 
TGGTGGATTC GTCAAGCCAT TACCCGTGCG ATCGCAGAAA AAAGCCGAAC CATTCGCTTA 
CCGATCCATA TTACCGAAAA ACTTAATAAA ATCAAGAAAG CCCAGCGACA ACTTTCCCAA 
GAAAAAGGAC GCGCTGCTAC CATTGCCGAA TTAGCTGAAG AACTGGAATT AACCCCTAGA 
CAAGTACGGG AGTACCTAGA ACGAGCCCGT CAACCCTTGT CTCTTGACTT ACGGGTAGGA 
GATAACCAAG ACACCGAATT AGGGGACTTA TTAGAAGATA CCGGCCAGTC TCCTGAAGAT 
TATGCCACTC ATTCTTCTTT GCAGTTGGAC TTAGATAGAC TGATGGAAGA GTTGACCCCG 
CAGCAGAAGG AAGTGTTAGC CTTAAGATTT GGGTTATCCG ATGGTAAACC CCTAACTTTA 
GCTAAAATTG GCAGTATCTT GAATATTAGC CGCGAAAGGG TTAGGCAAAT CGAACGGGAA 
GCATTAGCAA AATTGCGAAA ACGAAAGGCC AATATTCGGG AATATTTGGC GAGTTAA
 
Protein sequence
MNVSKSSPDP VRAYLREIGR VPLLTHEEEI LYAKRVQRFV ALETLKESLT EELGQEPTIA 
QWAKAAKMTQ KELRSAIEAG EAAKRKMVEA NLRLVVSVAK KYLKRNLDLL DLIQEGTIGM 
QRGVEKFDPT KGYRFSTYAY WWIRQAITRA IAEKSRTIRL PIHITEKLNK IKKAQRQLSQ 
EKGRAATIAE LAEELELTPR QVREYLERAR QPLSLDLRVG DNQDTELGDL LEDTGQSPED 
YATHSSLQLD LDRLMEELTP QQKEVLALRF GLSDGKPLTL AKIGSILNIS RERVRQIERE 
ALAKLRKRKA NIREYLAS