| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PCC8801_1308 |
|---|
| Symbol | |
|---|
| ID | 7102199 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cyanothece sp. PCC 8801 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011726 |
|---|
| Strand | + |
|---|
| Start bp | 1360766 |
|---|
| End bp | 1362304 |
|---|
| Gene Length | 1539 bp |
|---|
| Protein Length | 512 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 643474391 |
|---|
| Product | carotene isomerase |
|---|
| Protein accession | YP_002371528 |
|---|
| Protein GI | 218246157 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG1233] Phytoene dehydrogenase and related proteins |
|---|
| TIGRFAM ID | [TIGR02730] carotene isomerase
[TIGR02734] phytoene desaturase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGAGGGA CATTAACGGC GATCGCATCT AAAAATAAAA CCAATAGTCC AAACTATGAT
GTCATTGTCA TTGGCTCAGG GATGGGAGGG TTAGTCACCG CTACCCAATT AGCGGCTAAA
GGTGCTAAGG TCTTAGTCTT AGAAAAGTAT CTCATCCCTG GCGGTAGTGC GGGATATTTC
GAGCGAGAAG GCTATCGTTT TGACGTGGGT GCCTCGATGA TTTTCGGGTT TGGAACCCAA
GGAACCACCA ATTTACTCAC CCGTGCCTTA GAAGCGGTTA ATGTTAGCCT AGAAACGATT
CCTGACCCGG TACAGATTCA TTATCATCTT CCCCAAGGAT TAGATCTCAA AGTCCATCGA
GACTACGAAA AATTTTTAGA GGAACTAATC GCTAAATTCC CCCAAGAAAA AGCAGGGATT
CGTCGGTTTT ACGATGAATG CTGGCAAGTC TTTAACTGTC TCAATGCCAT GGAGTTACTC
TCCCTTGAAG AACCTCGCTA TTTGATGCGG GTCTTTTTTC AACATCCTTT TGCCTGTTTG
GGGTTAGTTA AGTATTTACC CCAAAATGCC GGAGATATTG CACGACGCTA CATCCGTGAC
CCGGAATTAC TGAAATTTAT CGATATGGAA TGCTACTGTT GGTCAGTGGT TCCGGCTGAT
CGAACCCCAA TGATCAACGC CGGGATGGTT TTTTCTGACC GCCATTATGG GGGAATTAAC
TACCCTAAAG GGGGAGTCGG ACAAATTCCC CAAAAATTGG TGGAAGGACT CGAAAAAGCC
GGGGGAGAAA TTCATTATAA AGCGAGAGTT ACCAAAATTT TGCTCGAAAA AGGCAAAGCA
GTGGGGGTGC AATTAGCCAA CGGTCAACAA TTCTACGCTA AACGCATCGT GTCTAATGCC
ACTCGTTGGG ATACCTTTGA GAAGCTATTA CCTCCGGAAA TGATGCCGAA GTCCGAACAA
AAATGGCAAC AGCGTTATCA AAAGTCCCCC AGTTTCCTCA GCTTGCATTT AGGGGTTAAA
GCCGATCTTT TGCCGCCAGG AACGGAATGT CACCATATTC TCCTAGAAGA TTGGGACAAT
ATGGAAGCAG AACAGGGAAC GATTTTTGTT TCCATTCCGA CCTTACTCGA TCCGAGTTTA
GCTCCCCCAG ACCACCATAT TATCCATACG TTCACCCCAA GCTGGATAGA ACAGTGGCAA
GGACTTTCTC CCCAAAATTA TCAAAAACAG AAAGATGAAG CGGCCAGTCG CTTAATAGAA
CGCTTAGAGC GGATTTTTCC AGGGTTGAAT CAAGCGTTAG ACTATGAAGA GGTGGGAACT
CCCCGAACCC ATCGACGCTT TTTAGGACGG GATGGGGGAA CCTATGGACC CATTCCTGGC
CGCAAATTAG CGGGGTTGCT CGGAATGCCA TTTAATCGGA CGGCGATCGC AGGACTCTAT
TGTGTTGGAG ATAGTACGTT TCCCGGTCAA GGGTTAAATG CGGTGGCTTT TTCGGGGTTT
GCCTGTGGCC ATCGTATCGC GGTTGATCTA GGCTTGTGA
|
|---|
| Protein sequence | MRGTLTAIAS KNKTNSPNYD VIVIGSGMGG LVTATQLAAK GAKVLVLEKY LIPGGSAGYF
EREGYRFDVG ASMIFGFGTQ GTTNLLTRAL EAVNVSLETI PDPVQIHYHL PQGLDLKVHR
DYEKFLEELI AKFPQEKAGI RRFYDECWQV FNCLNAMELL SLEEPRYLMR VFFQHPFACL
GLVKYLPQNA GDIARRYIRD PELLKFIDME CYCWSVVPAD RTPMINAGMV FSDRHYGGIN
YPKGGVGQIP QKLVEGLEKA GGEIHYKARV TKILLEKGKA VGVQLANGQQ FYAKRIVSNA
TRWDTFEKLL PPEMMPKSEQ KWQQRYQKSP SFLSLHLGVK ADLLPPGTEC HHILLEDWDN
MEAEQGTIFV SIPTLLDPSL APPDHHIIHT FTPSWIEQWQ GLSPQNYQKQ KDEAASRLIE
RLERIFPGLN QALDYEEVGT PRTHRRFLGR DGGTYGPIPG RKLAGLLGMP FNRTAIAGLY
CVGDSTFPGQ GLNAVAFSGF ACGHRIAVDL GL
|
|---|
| |