Gene PCC8801_0471 details

Gene Information

• Locus tag: PCC8801_0471
• ID: 7101944
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Cyanothece sp. PCC 8801
• Kingdom: Bacteria
• Replicon accession: NC_011726
• Strand: -
• Start bp: 480947
• End bp: 482857
• Gene Length: 1911 bp
• Protein Length: 636 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 643473580
• Product: 1-deoxy-D-xylulose-5-phosphate synthase
• Protein accession: YP_002370723
• Protein GI: 218245352
• COG category: [H] Coenzyme transport and metabolism; [I] Lipid transport and metabolism
• COG ID: [COG1154] Deoxyxylulose-5-phosphate synthase
• TIGRFAM ID: [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCACATAA GTGATATTAC TCATCCGAAT CAATTGCATG GACTATCCAT CCGGCAACTG 
GAAGACGTAG CCCGTCAAAT TCGAGAAAAG CACCTACAAA CCATCGCAGC AACAGGGGGA 
CACCTTGGCC CCGGTTTAGG GGTAGTCGAA TTAACCATCG CCCTCTATCA AACCCTAGAC 
TTAGACCGCG ATAAAGTGAC CTGGGACGTG GGACACCAAG CCTATCCCCA CAAAATGCTA 
ACCGGCCGTT ATAAAAATTT CCACACCCTA CGACAAAAAG ACGGTATTGC AGGATATCTT 
AAACGTTGTG AAAGCAAATT TGACCATTTT GGAGCCGGAC ACGCTTCTAC AAGTATTTCT 
GCGGCGTTAG GCATGGCTTT AGCCAGAGAT GCCCAAGGGG AAGACTACAA AGTCGTAGCC 
GTCATCGGAG ATGGAGCCCT TACCGGGGGT ATGGCCTTAG AAGCCATCAA CCATGCAGGA 
CATTTACCCC ATACTAATCT GATGGTGGTC TTAAACGACA ATGAAATGTC CATTTCTCCC 
AATGTTGGGG CAATTTCTCG CTATCTCAAC AAAGTTCGCC TCAGTGACCC CGTTCAGTTC 
CTCGCCGACA ACCTCGAAGA ACAATTCAAA CACTTGCCCT TTTTTGGCGA CTCCCTGAGT 
CCGGAGATGG AACGGGTTAA AGAAGGGATG AAACGCCTGG CAGTGTCTAA AGTGGGGGCT 
GTGATTGAAG AATTAGGGTT TAAATACTTC GGTCCGATCG ACGGTCATAA CCTACAGGAA 
CTCATTAGTA CCTTTAAACA GGCTCATAAA GTCACTGGAC CCGTTCTCGT TCACGTTGCC 
ACCGTTAAAG GAAAAGGCTA CGAATTGGCG GAAAAAGACC AAGTGGGCTA CCATGCTCAA 
AGTCCCTTTA ATTTAGCCAC GGGTAAGGCT ATCCCGTCGA GTAAACCGAA ACCCCCCAGT 
TACGCCAAAG TCTTTGCCCA TACCTTGACC ACCCTAGCGG AAAATAACCC CAAAATTATC 
GGTATTACCG CAGCCATGGC TACGGGAACC GGACTCGATA AACTTCAGGC AAAACTGCCA 
AAACAATACA TTGATGTGGG TATCGCCGAA CAACACGCCG TTACCTTAGC TGGTGGCTTA 
GCTTGTGAAG GAATGCGTCC CGTAGTAGCG ATTTACTCGA CTTTTCTGCA ACGAGCCTAT 
GACCAAGTGC TCCATGATGT CTGCATTCAA AATCTTCCCG TTTTCTTCTG TATGGATCGC 
GCAGGAATTG TCGGGGCAGA CGGTCCAACC CACCAAGGAA TGTACGATAT CGCCTATCTG 
CGCTGTATTC CCAATATGAC CATTATGGCT CCTAAAGATG AGGCGGAATT ACAGCGCATG 
ATCGTGACGG GGGTTAATTA CACTGATGGA CCGATCGCCA TGCGCTATCC CCGTGGTAAC 
GGTATCGGTG TGCCTTTGAT GGAAGAAGGA TGGGAACCTC TCCCCATTGG AAAAGGCGAA 
ATTCTCCGCA ATGGAGATGA TCTGTTGATT CTGGGGTACG GAACTATGGT TAATACGGCT 
TTACAAGCGG CGGAAACCCT CCGAGAACAC GGCATCGAAG CCACGGTGGT TAATGCCCGT 
TTTGTTAAAC CCTTGGATAC CGAGTTAATT CTACCCTTAG CTCAACGCAT CGGCAAAGTT 
GTCACCCTTG AAGAGGGTTG TCTGATGGGC GGTTTTGGGT CTGCTGTGGC TGAAGCGTTC 
TCTGACCATA ATGTGTTAGT TCCTCTCAAA CGCTTTGGTG TTCCCGATCG CTTAGTGGAT 
CATGCTACCC CTGATCAATC AAAAGCCGAT TTAGGCTTAA CTAGCCCCCA AATTGCGGAA 
CAAATTCTCC AAGTTTTCTT TAGTAATCGA CAACCTTCGA TGGTGAGTTA A 

 

Protein sequence

MHISDITHPN QLHGLSIRQL EDVARQIREK HLQTIAATGG HLGPGLGVVE LTIALYQTLD 
LDRDKVTWDV GHQAYPHKML TGRYKNFHTL RQKDGIAGYL KRCESKFDHF GAGHASTSIS 
AALGMALARD AQGEDYKVVA VIGDGALTGG MALEAINHAG HLPHTNLMVV LNDNEMSISP 
NVGAISRYLN KVRLSDPVQF LADNLEEQFK HLPFFGDSLS PEMERVKEGM KRLAVSKVGA 
VIEELGFKYF GPIDGHNLQE LISTFKQAHK VTGPVLVHVA TVKGKGYELA EKDQVGYHAQ 
SPFNLATGKA IPSSKPKPPS YAKVFAHTLT TLAENNPKII GITAAMATGT GLDKLQAKLP 
KQYIDVGIAE QHAVTLAGGL ACEGMRPVVA IYSTFLQRAY DQVLHDVCIQ NLPVFFCMDR 
AGIVGADGPT HQGMYDIAYL RCIPNMTIMA PKDEAELQRM IVTGVNYTDG PIAMRYPRGN 
GIGVPLMEEG WEPLPIGKGE ILRNGDDLLI LGYGTMVNTA LQAAETLREH GIEATVVNAR 
FVKPLDTELI LPLAQRIGKV VTLEEGCLMG GFGSAVAEAF SDHNVLVPLK RFGVPDRLVD 
HATPDQSKAD LGLTSPQIAE QILQVFFSNR QPSMVS