Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PHATRDRAFT_50451 |
Symbol | |
ID | 7199261 |
Type | CDS |
Is gene spliced | Yes |
Is pseudo gene | No |
Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
Kingdom | Eukaryota |
Replicon accession | NC_011698 |
Strand | + |
Start bp | 107586 |
End bp | 109923 |
Gene Length | 2338 bp |
Protein Length | 688 aa |
Translation table | |
GC content | 55% |
IMG OID | |
Product | predicted protein |
Protein accession | XP_002185380 |
Protein GI | 219130455 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | CTTTACTGTT AATACCCGTT CCATCATCGC AGTCAAAACG TAGCAGAACA CGAGAGAGTT GATCCTACCG GAAAGTATCT TTAGCCAGTC AGTCAGTGAG TGAGTAACGT CTACCGGAGG TGTTTTTGTC AGACAGATGA AACGAATGGT TCACAGAATG AGGCGAATGC CCGTTGCGGA TTCAAGCCGT CGGCTTGGTC GGGTGGGGTA CTTATTGTTG CTTTTGTGCT GGGCATGCCC GTCGCAACTC GGACAATCAT TCGTGCTGGA GCCCAGGAAG TCGAAGCGAC GCGTTTCGAT TCTTTCGAGT CCACTATCCC AAACATTCGT GTCGACAACA TCAGCAAGTC GAACGTCGCG GTCGCGCAGT CTTGATGTTC TGACGACGGA AGCTCCACCG ACATCCTGTA CTCGCCTCGC TAATGCTGCG GATGACTCCG ACACTCGCCC CGGTGACGAA GGTTCGTCAT TGGCTGGCCA AGTTGGCAGT GGTCCCAACT GGATCGAGCG TTCCTTTCCG GTGGACGTCT TGGGTACGTC CAACGTCGAT CCCAAGAAGG TGGACGACTA CAATCTGGGA ATTTGTGGAC AATCCTACCA AGTTGGACCA CTCGGGGCAC GCATGTACGA GGCCATCACT CGCAACGTCA ATAGCTCCGT CCAACTGGCC ACACCCGAAA TCACCAAGGC GTATAAAGTC TACGCCATGG ACTTTACAGC GAAGGAAGCC GTCCGGGCGG CGTTGAAACA GAACGGTCTC GAAATGGTCC TCACCGAAGA AGAAGAGGAT GAAGGCATGT GGGCTGATAT TGATTCCATT CGCTTGCTTA CCACCAATGA GGACGGTAGT GTGACAGTGA CTGGTCCGCT CTACGATTCT TGGCAAGATG CGGTGGACGT CTGGAAGCCG GGACAGGCTT TCCACTTTGT CGCCCGCCAA GTCCCGGCCA AGATGCGGGA ATTGGAATTG GACGAGCTTT TGCAAGCATT GGATCCGAAA GGAGAACTAC GCGCCCAAGC TAAAGAAGCC GGTATGGCCT TGCCGGGTGA AGACATTGAT AGTCTAGCCG TCTTGGCCAG TGACAATGTC CGACGAGTCG AAACGGCGCC TCGGGACGCC GTACCGGTAG CGGACGCCTA CGCCGGCACG GACGAAAAAC GCGGTTACCG GGTTGTGTAC GCCAGTGATC TATTACAGGA TTCCATGAAC GCCGATGGCA CGGAACAGCG GAAAACTCTC ATGCACGTGA TGGAAGCCTT GGTCGCGCAT GGTTGTGTAA TCGTGGATTT GACGGACGGT GGACTGGCTC TGCAAAAAGC CTTTGAGATG GCCCAAATGT GGGATACGGC ACAAACTTTC TTCGGACAGC CCGATAAAAC ATCTTTACCG GGTATGGAAA CGGTCCAAGA AACGGGCTCA ACGCACGCCA AGGCGGGTTA CGCTTCGTAC GATGACGGCA ATTTGCAGTT TCTCGAAACG CGGTACGACC GGGAAGGAAA TCTACTTCCG GAAGGGGCGC GAGCACTACT GGGACCCCAG GGCTGCGCGG CTTTGCGAAA GGCTTTTCAC ATTGTCACGA ATGTAGCCAA GGACGTAACT CGTATTGCGG TCTCGGCGTC GTCTGTCGAA TACCAAGCAT TGGATGGCGT CGCGGCGTCC GCAGCCGCTA TCCAGCTTAC CGACGAACTG TTGGACGACG GTGAACCATT GACGGCGAAT ATTCCGCACT CTGAAGGATC CGTCAGTATG AGTCCACATC GATTGTGCCG CTATTCCAAC AATGGCAGCA ATAGCAAGGA AAAATCGGAC GACCAATCGG ATACGGTCGA TGCGAAAACG AAAGAAGTGT TCGGTGCACA CACCGATTCC ACCTTTGTTA CGGCCGTGCC GGTCGCCGCC GTCGCCGGCT TGGAAGTGTA CGATGAAGAC GCCGAGCAAT GGTACCGCCC CGAATTAGCC GCACTCCGGC ACTGGCAAGG CTTGCAAAAG GGCTTGGGTT TGGACGTGAA CGAGCTCGTG GAAACGATTG ATGGCCAACA GTTACCTTGG TTCGCCCGCT ACGTAGTCCT AATGCCAGGC GAACTGCTAC AGATCGCCAC TCGCAACGAA ATTTTGGCAG CCGTGCATCG CGTGGTGGCG ACCGAGGAGA CCTCCAGTCG GTTGAGCGCT CCTATCTTGT TGCGGGGACG ACCGGGCACC ACCTGGGACG TATCGCGGTA TCTCGGCGGT GCTTTAGATA ATCCGCTGCT AGAGGAGATT GACGGCATGA CGATAGAACA AATACACGAC GCGATGCAAC CGAAATCATC GTCGTTCGAA TAAAATATCA AAGCTACG
|
Protein sequence | MPVATRTIIR AGAQEVEATR FDSFESTIPN IRVDNISNLD VLTTEAPPTS CTRLANAADD SDTRPGDEGS SLAGQVGSGP NWIERSFPVD VLGTSNVDPK KVDDYNLGIC GQSYQVGPLG ARMYEAITRN VNSSVQLATP EITKAYKVYA MDFTAKEAVR AALKQNGLEM VLTEEEEDEG MWADIDSIRL LTTNEDGSVT VTGPLYDSWQ DAVDVWKPGQ AFHFVARQVP AKMRELELDE LLQALDPKGE LRAQAKEAGM ALPGEDIDSL AVLASDNVRR VETAPRDAVP VADAYAGTDE KRGYRVVYAS DLLQDSMNAD GTEQRKTLMH VMEALVAHGC VIVDLTDGGL ALQKAFEMAQ MWDTAQTFFG QPDKTSLPGM ETVQETGSTH AKAGYASYDD GNLQFLETRY DREGNLLPEG ARALLGPQGC AALRKAFHIV TNVAKDVTRI AVSASSVEYQ ALDGVAASAA AIQLTDELLD DGEPLTANIP HSEGSVSMSP HRLCRYSNNG SNSKEKSDDQ SDTVDAKTKE VFGAHTDSTF VTAVPVAAVA GLEVYDEDAE QWYRPELAAL RHWQGLQKGL GLDVNELVET IDGQQLPWFA RYVVLMPGEL LQIATRNEIL AAVHRVVATE ETSSRLSAPI LLRGRPGTTW DVSRYLGGAL DNPLLEEIDG MTIEQIHDAM QPKSSSFE
|
| |