| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_41409 |
|---|
| Symbol | |
|---|
| ID | 7199306 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011698 |
|---|
| Strand | + |
|---|
| Start bp | 94583 |
|---|
| End bp | 99103 |
|---|
| Gene Length | 4521 bp |
|---|
| Protein Length | 1506 aa |
|---|
| Translation table | |
|---|
| GC content | 55% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002185377 |
|---|
| Protein GI | 219130448 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.974379 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTTGT TCGTGGCGAC GAGTCGTCGT TTGGACGGTT GGACGGGTCC CTCCGCGGAT
CCCGACGCGG AGTCCTGTGC CAGTTCCCCG GCATCCGCCT CGCCGCTGCG CACGACCCCG
CGCCAGTACT TGTGGAGTCC CCGTGGCGTC ACACGCACCC CGGAACGAGA CCCGACCGCT
ACAACCGAAT CGGGACACAA AGACGCAACC GTACACGATG ATGTAGAAAG ACGTTGGACG
CCGATCCAGT CCACAACGGC ACGGACTCTG TTCCCTCCGA CCCACTGCGA CGTGGGCACG
GTGTGGGACA CTCGTGCCGT CGAAACCCAC GCGCCGGTAG TTCCGGACAC CGTGTGCCGG
ACCAAGACGT CCCGTTTCGC CGTGTGGCAC GACACGTCCG AACCCGTGGT GCCGCTTGCG
GTCCGTTCGA CGACGTCAAC TTTGGTGGTG GTACAGCCGT CCGTGTCGTT CGCGATCGAG
ACGTGTCGGA ATCATTCCGA CACGGTCGTC GCACGGGAAC GCTGCGATCC CGAATGGCTT
CGGATCGATC ACTATCGTCG AGCGAACGAC ACGACCGCAG CACCCAAACG TACCACCACC
GCGACTAGCA CAACCAGTAC AACCAGTACA ATTAGGACTA CTCCAAAGAC CGCAGCCACA
AACACAACGA CCATGTCTCC TACCGTTCCT TCCGTATCCG CCACTTCCCG CCACACCACG
CTTGGTCGTG CACTGGTGGG GCCTCGGGGA GTCGATCCCG TTACGGCTCC CACCCCGACT
CGGACAACAC TCCCGAGTCT CACCCACACG AAGCCCCTAA CTCCCACCCC GAGCAACGCC
CGTATACTCC GTGACGCCTC CGGCAATCAA CCCGGACGAC CGGCAGTTGC TCCGTCCGAA
GAACCCACGC ACGACTTCCC TACCAAGATG CCGTCCCCAC CCGTCGCTTC GTCCATTGCC
AAAGAAAACG CCCCCACGGT CTCTCCTTCG GTCCGTAGCG ATTCTCACGA CGTTGTTACC
ATCACCTACA CCACCACTAC CGAGTCCGTT CCCGAAACGT TGTGGAGCCG GGTCGTCGAG
AGTGATGTTT CCTTTTTGGG AGACATTACG GACACTCCCG ATCGCGACAC TAGTCACGTC
CACGCCAACC CTTGCGATCC GATGGACCAC GCGATTGTCA CGGACGACGA AGATTCGGTC
ACGTCCACCA GCGTGCACGC CGTGGGAAAC ACCAGCACCC GCATGCTGGA CGTTTCGACC
ACGGAGGAGT CCCACATGCT GGACCTTTCG ATCGAGACGG GTCCCCAGTG TGCGCCGTCG
GCTGAGCACG ATGGACACGG CTTGTTCGGA GCGGATCGTA CGGGTGACAC CGATAACGAC
TCGGGGAAAG AGGAAGAAAC GATCGAGACT ATACTTGATG ATTCGGTCGA CACGGGATCC
GTTCTACCGT TGCCCGACGC CAACGGCATG GACGAATCGT CGACTGCCGG TGAGGATGAT
CCACGGCCGG CCCCACAAAA AAACGCACCC TTGTTGGAGA CGGCCACGGT CCAAACCGAA
CAGTCCAACG AATACATGTC GGATCGCAAG TCATCAACGG TGGTTCCGCC AGAAACCGAG
CACCCGGAGT CAGCGCCCGT CTTGTCGTGG GCGGCCGTCG CCAAAACAAC ACCTTCCAAA
CCCAAGACTT TGAACAATAG AGCGACGTCG CCAAGCACAA TTCCGGTATT CCCGGCGCCC
ACGCACAACA AAGTTACCAC CGCCCCCCTC GATACCTCGT CCAGTACCTG GGAGCACGAT
GGGCTCCTCG TCTTGTGCTC GCATCAATCA TTGGACAGAT CCGTCACGGT CAACCAAATC
AAAGTCTTTA CTATATTGGG AGGTCACAAC ATCTCCTACG AAACCATCGA CGGTGCCGAC
CCGGTGCACA AACAAACCCG CAATCACCTG TTTGAAGTCT CGGGCTTGAA GGCGCAATAT
CCCCAGTTCT TTTTGGTCCG GAATGGCGAG CTGACCTTCT GGGGTGATTT TCACCAGTTT
GTGCAGGCCG ACCAAAACGG TGAATTGCAA GTGGCTTTGG CCGCAGGTGT GGAGCTAGCT
CCCGTGATTC GTCCAATCGA AACGGCAATG GTCGACACCG AAGACACTTA TTCTATAGAG
GCGGGGAACG TCCCGAAATT ATTGGTGCTC TGTTCGAATC AAACCATGAG CCGAAGAGTA
ACGTCGCATC AAGAAAAAGC ATACACTATT CTGAAGGCTC ACCGTATCCC TTTTGAAACT
CTGGACGGAG CCGACGCGTG GAACAAATCT CGACGCGAGG AGCTCTTTCA GATTTCGGGA
CTGCGCGCGC AGTACCCCCA GTTCTTTCTG ATTGACGAGA CAAGCGGCAC CACGACGTTT
TGGGGAGATT GGGAGCGTTT CATGTACGCC AACGAAGACG ACGTGCTCGT GAACGAGCTC
GGTTTGACAC CTTCGTATGC TCCCGAACAG CTTCAGAACC ATGTGAACAC GGCCAACGAT
ACTCACGCTA GCAAGACAGA ACGGATGGAG TCCTTCGACT CCAACGCTGG AAATTCGGAA
GGAACAGACG CTAATGAAAA GCGGTTCCTG GTGCTGTACT CCAGTCAATC GCTTGATCGC
CAGGTGACGG TCAATCAGGA GAAGGCATAT TCCGTACTGA CGAACAAAGG TATACCGTTC
GAGACACTGG ACGGGATCGA TCCCGACAAT GTCCAGCGCC GCAACACGCT CTTTCGAATC
TCGGGATTGC GTGGCACGTA TCCGCAGTTC TTTATCGTTG ACGGTCACAC CACCGAATTC
TGGGGCGACT GGAATCGTTT CAACAAGGCG AGGAAAGCTG GAAAATTGAG TATATTATCT
ACGCCGATCG AAAAGGAGAA AATTGCGAAG GGAATTGCCC AAGCATCTAC GGGACAATCG
GCAGCCGGAA CGGGCAAGGC TCACACCGAG AATCAAAATA CCTCCGCTTC CAGTAGCGCA
GCTACCTCTT CTGGAACCGG TGGGCCTTCC TCACACAGCG AATCGAATAG CAACACTCGA
AGTAGCCAAG CAGTAGCTAC AGTACAAACA ACGGACCGGA TCTCTACCAA GACCGACATT
ACTATTTATG GAGCTACAAG TTTTGTTGCA AAGCACGTCA TTACGTATAT AATGCAAACA
AGCATTCATG GTGCCAATAC TCTGAAAGTG ACGCTGGCCG GACGCAGTTC ATCCAAGGTC
CAAGCCCTAA CAGACGAATT CTCACAAAAG ATGAAGAATC TCTTTATTGT GAGCGAGAAA
CCACAAGGCA AATGTGTCTT TGACTTTTTT ATTGCCGAGA GTTCAAACCC TTCCGCTCTT
GGCAAAATGG CATCCCGAAC CAAAGTCGTC CTCAATTGCG CTGGCCCGTT CACTCGACTT
GGCTCTAACG TCGTTGCGGC CTGTGCTAAG ACTGGTGCGG ACTACGTCGA CATAACGGGC
GAGATAGAAT GGGCATCCGA GATGCGGCAG CTGTACAGTG CCGACGCTGC CAAGTCTGGC
TCGCGTATCA TTTCATTCTG CGGATTCGAT TCCATACCTT CTGACCTGGC TGTTTACACT
GCGATCAAGG TCATGAAAGA AAAGTTGAAA CAAAACGCGA AACCTATCGA AACAGCGTCG
ACATATCACT CCAACTTTGG GCTTGCCAAC GGCGGCACGT TGCAAACGGT CTCGGAAATG
TCGCTAAACC TACGGCATTG CCTTTTCCGT TGGGTCCCCT ACCTTCTCAA CGATCCTTTG
GCGCTGACCC ATCCCAGCGA TCGCAGTGCG CAGTCGCCGC AAGAAACGCG AAACAGAATG
GCCAAGGCAG AATGGATCAA CCAGTTGCCG TTCTTCCATT CAATTTTTCG AATGGGTGTG
TCGTCGCCAT TCTTTATGGC TCCAGTCAAC ACCAAAGTTG TCAACGCCTC CGCCGTTGCC
AACAACTACG GGCCGAGCTT CACTTACTAC GAACGATATG TGCCGACGGG CTTTCGTTTC
ACAGTTCAGC TAGGAACACT GTCGCTGCTT CCCGCAGTCG TCACTCAATT TTTAATATAT
CTCGCGGCGT TTCTGATCAA ATTTCCCATT CTTGGGCCGT TGCTGATCCA ATGGTTTATG
CCACCAGGCT CTGGTGCATC GGATCTTTTC TGCAAAACGG GATATGCTGA AGTCTATGCG
GACGTTGTTA CTTCCCCCAA TGCCGCGGGA AAGGTTGACA AGGCAAACTG CTTCCTGGCC
TTTGAGGGAG ATCCCGGGAA TTGGGTGACA GCTCAAACAG TAGCCGAGTC GGCACTCGCC
TTGGCACTGA ACAAGAAGGA TCTTCCGCCT CGTAGCCAGG ACGGCTTTGG TACGCCAACC
GAAATTCTCG GTGGTGTTCT TCTGAAACGT TTGACCGAGA CCAAGATTCG CCCTGTGGTT
GTTGTGACCG ACGTGCGTGC GGCGACATCA AAAATAGAGT GGTCTATGTT TCCCCTACAT
GTGACAATGA GCGCCCACTA G
|
|---|
| Protein sequence | MSLFVATSRR LDGWTGPSAD PDAESCASSP ASASPLRTTP RQYLWSPRGV TRTPERDPTA
TTESGHKDAT VHDDVERRWT PIQSTTARTL FPPTHCDVGT VWDTRAVETH APVVPDTVCR
TKTSRFAVWH DTSEPVVPLA VRSTTSTLVV VQPSVSFAIE TCRNHSDTVV ARERCDPEWL
RIDHYRRAND TTAAPKRTTT ATSTTSTTST IRTTPKTAAT NTTTMSPTVP SVSATSRHTT
LGRALVGPRG VDPVTAPTPT RTTLPSLTHT KPLTPTPSNA RILRDASGNQ PGRPAVAPSE
EPTHDFPTKM PSPPVASSIA KENAPTVSPS VRSDSHDVVT ITYTTTTESV PETLWSRVVE
SDVSFLGDIT DTPDRDTSHV HANPCDPMDH AIVTDDEDSV TSTSVHAVGN TSTRMLDVST
TEESHMLDLS IETGPQCAPS AEHDGHGLFG ADRTGDTDND SGKEEETIET ILDDSVDTGS
VLPLPDANGM DESSTAGEDD PRPAPQKNAP LLETATVQTE QSNEYMSDRK SSTVVPPETE
HPESAPVLSW AAVAKTTPSK PKTLNNRATS PSTIPVFPAP THNKVTTAPL DTSSSTWEHD
GLLVLCSHQS LDRSVTVNQI KVFTILGGHN ISYETIDGAD PVHKQTRNHL FEVSGLKAQY
PQFFLVRNGE LTFWGDFHQF VQADQNGELQ VALAAGVELA PVIRPIETAM VDTEDTYSIE
AGNVPKLLVL CSNQTMSRRV TSHQEKAYTI LKAHRIPFET LDGADAWNKS RREELFQISG
LRAQYPQFFL IDETSGTTTF WGDWERFMYA NEDDVLVNEL GLTPSYAPEQ LQNHVNTAND
THASKTERME SFDSNAGNSE GTDANEKRFL VLYSSQSLDR QVTVNQEKAY SVLTNKGIPF
ETLDGIDPDN VQRRNTLFRI SGLRGTYPQF FIVDGHTTEF WGDWNRFNKA RKAGKLSILS
TPIEKEKIAK GIAQASTGQS AAGTGKAHTE NQNTSASSSA ATSSGTGGPS SHSESNSNTR
SSQAVATVQT TDRISTKTDI TIYGATSFVA KHVITYIMQT SIHGANTLKV TLAGRSSSKV
QALTDEFSQK MKNLFIVSEK PQGKCVFDFF IAESSNPSAL GKMASRTKVV LNCAGPFTRL
GSNVVAACAK TGADYVDITG EIEWASEMRQ LYSADAAKSG SRIISFCGFD SIPSDLAVYT
AIKVMKEKLK QNAKPIETAS TYHSNFGLAN GGTLQTVSEM SLNLRHCLFR WVPYLLNDPL
ALTHPSDRSA QSPQETRNRM AKAEWINQLP FFHSIFRMGV SSPFFMAPVN TKVVNASAVA
NNYGPSFTYY ERYVPTGFRF TVQLGTLSLL PAVVTQFLIY LAAFLIKFPI LGPLLIQWFM
PPGSGASDLF CKTGYAEVYA DVVTSPNAAG KVDKANCFLA FEGDPGNWVT AQTVAESALA
LALNKKDLPP RSQDGFGTPT EILGGVLLKR LTETKIRPVV VVTDVRAATS KIEWSMFPLH
VTMSAH
|
|---|
| |