Gene PHATRDRAFT_50390 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPHATRDRAFT_50390 
Symbol 
ID7199203 
TypeCDS 
Is gene splicedYes 
Is pseudo geneNo 
Organism namePhaeodactylum tricornutum CCAP 1055/1 
KingdomEukaryota 
Replicon accessionNC_011697 
Strand
Start bp206026 
End bp208369 
Gene Length2344 bp 
Protein Length623 aa 
Translation table 
GC content58% 
IMG OID 
Productprobable cell surface glycoprotein 
Protein accessionXP_002185292 
Protein GI219130271 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0151497 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
CTGAAGTTGC AATTTGTAGA CCGCGATAAA AGCCACCATG AAGACTTCGT TTGCCCTCCT 
TTCTCTCTTC TACCCTTTGC TGGTGCTTGG TATTGCCCAG GCGCAGTCTG CTGTCTCGCA
ACAGCCTGAC AAGTTGGTGA GTATAGCTGC CCTGTAGGAA CTCGATCCAA GCCTGGTGTT
GTCTCATTGC CTAAACTTTG AAACGAATCA TTAATTATCT TCAGCTTAAC CTCACGTTCC
CTCTTGCTTG CGATTTTCAA TAGAACAATG GTGTCCCATC CGTCCTTGAT GTTGCTGGTC
GCCGCCTCAA GAAGGGAGGC TCCAGCTATC ATGGTGAAGG CAAAGGCGGC ACAGCTTCGT
CCAGCGCGGA CAGCAAGGGC AAGGGCGGCA AAGGTGCTTC CGGCTCTACG AAAAGCACCA
AGTCCTCCAA GTCTCGCAAG TCTGCGAAGG ATCCCAAATC AGAAAAGCAC CCCAAAGCCA
CCAACGCACC TGCTCCGGTT GGAACTCCCG TAGTCGCCCC TGTTGTGGCC CCCATCCCAT
CTCCCGTGGT CGCCCCTGTT GTGGCACCCA TTCCATCTCC TGTTGTCACC CCCGTTATCG
CTCCCGTTCC ATCTCCCGTT GTCGCCCCTG TTGTGGCCCC CATTCCGTCT CCTGTTGTCG
CTCCCGTCCC GTCTCCCGTG GTTGCCCCGT CCTATCTCCC ACCGTTCCTA CTATGGAGGT
TGTGGGTGTG GAATACAACA TCGCGGTGGG AGACACCATG GGGACTGACA TGATGGACCT
CCTAACAGAG ATCGAAACGG ATCTGGTTGA TGCCATGGAT ACCTTGGCGC CTGAAATTGT
CGCAGAGATT CTTGCCCCCG GTGGACGTTA CTTGAAGGCT AATGTTTTGG CCCTTCGAAA
TGAGCGCCGT CTGAATGCTG TAGTGCAGTT GCCGACTGCC ATTGATTCCT TAATGATGAT
GGGTACGTGG AGAGTTGGAT GAAGATAAGA TGTGCCGTTG CTAGACGTGT TGTGGATCTA
ACGGTTGTTC TGGCTTTTTG TTTGTTTTTC AGAGTGCGCT GATTTTGTGG CTGGCGACGG
TGTGCTTTGC TTTGACGTTG TTCACAACAT TACTCTAATT ATCAGCGGTG ACACTGTACC
GGAGGTATTT GCGGGGCTGT TTGAAGCAGA CATGGACACC GCGATTGAAG AAGATCGGCT
ACAAGACGAA TTGATTGAGA TCAATCCTAA CTCTACGGTG ATTGTCTTTC CCTCTCCCGT
GGATGCTCCT GTCGATGCAC CGACGGATGC TCCTACACCC CTCGAGCCCA CGCCGGCGGA
ACCGACCCCA GCGGAGCCCA CGCCGGCGGA ACCGACCCCA GCGGAGCCCA CGCCGGCGGA
ACCGACCCCT GCGGAGCCCA CGCCGGCGGA ACCGACCCCT GCGGAGCCCA CGCCGGCGGA
ACCGACCCCT GCGGAGCCCA CTCCGGCGGA ACCGACCCCA GCGGAGCCCA CGCCGGCGGA
ACCGACCCCT GCGGAGCCCA CGCCGGCGGA ACCGACCCCT GCCGAGCCCA CGCCGGCGGA
ACCGACCCCT GCCGAGCCCA CTCCGGCGGA ACCGACCCCA TCAGGCTCGT CGGAAGCCCC
GTCTAGCGCT CCTTCAGGCT CGTCGGAAGC CCCGTCTAGT GCTCCTTCAG GCTCGTCGGA
AGCCCCGTCT AGTGCTCCTT CAGGCTCGTC GGAAGCCCCG TCTAGCGCTC CTTCAGGCTC
GTCGGAGGCC CCTTCTAGCG CTCCTTCAGG CTCGTCGGAA GCCCCTTCTA GCGCTCCTTC
AGACTCGTCG GAAGCCCCTT CTAGCGCCCC TTCAGGCTCG TCGGAAGCCC CTTCTAGCGC
TCCTTCAGAC TCGTCGGAAG CCCCTTCTAG CGCTCCTTCA GGCTCGTCGG AAGCCCCTTC
TAGCGCTCCT TCAGACTCGT CGGAAGCCCC TTCTAGCGCT CCTTCAGGCT CGTCGGAAGC
CCCTTCTAGC GCTCCTTCAG GCTCGTCGGA AGCCCCTTCT AGCGCTCCTT CAGACTCGTC
GGAAGCCCCT TCTAGCGCTC CTTCAGACTC GTCGGAAGCC CCTTCTAGCG CTCCTTCAGG
CTCGTCGGAA GCCCCTTCTA GCGCTCCTTC AGACTCGTCG GAAGCCCCTT CTAGCGCTCC
TTCAGACTCG TCGGAAGCCC CTTCTAGCGC TCCTGATGGC TTGGATTAAG CCTCTTCCCA
AGAGCCCACC GACCTTCCTA TGTAGGAAGG TCCTTTCAAG GCTTCTCATT TTTAGGTTTT
ACAGAAGCAG TTCTCTAGGT CAATACGTTT CAACGCAATA AAAGCTGGTG TCAGTTTATT
TACC
 
Protein sequence
MKTSFALLSL FYPLLVLGIA QAQSAVSQQP DKLNNGVPSV LDVAGRRLKK GGSSYHGEGK 
GGTASSSADS KGKGGKGASG STKSTKSSKS RKSAKDPKSE KHPKATNAPA PVGTPVVAPV
VAPIPSPVVA PVVAPIPSPV VTPVIAPVLS PTVPTMEVVG VEYNIAVGDT MGTDMMDLLT
EIETDLVDAM DTLAPEIVAE ILAPGGRYLK ANVLALRNER RLNAVVQLPT AIDSLMMMEC
ADFVAGDGVL CFDVVHNITL IISGDTVPEV FAGLFEADMD TAIEEDRLQD ELIEINPNST
VIVFPSPVDA PVDAPTDAPT PLEPTPAEPT PAEPTPAEPT PAEPTPAEPT PAEPTPAEPT
PAEPTPAEPT PAEPTPAEPT PAEPTPAEPT PAEPTPAEPT PAEPTPAEPT PAEPTPAEPT
PSGSSEAPSS APSGSSEAPS SAPSGSSEAP SSAPSGSSEA PSSAPSGSSE APSSAPSGSS
EAPSSAPSDS SEAPSSAPSG SSEAPSSAPS DSSEAPSSAP SGSSEAPSSA PSDSSEAPSS
APSGSSEAPS SAPSGSSEAP SSAPSDSSEA PSSAPSDSSE APSSAPSGSS EAPSSAPSDS
SEAPSSAPSD SSEAPSSAPD GLD