Gene PHATRDRAFT_50372 details

Gene Information

• Locus tag: PHATRDRAFT_50372
• ID: 7199148
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011697
• Strand: +
• Start bp: 124660
• End bp: 128164
• Gene Length: 3505 bp
• Protein Length: 1020 aa
• GC content: 52%
• Product: predicted protein
• Protein accession: XP_002185284
• Protein GI: 219130254

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

CATCTCTCAC CGACGGTGAA AAAAGTTTGG GTCTTGTGGT ATCGTCTTTG CCTGCGGACC 
TGTACGGGAC CCATCACAGT CACTACTTCT GTCTTGGCGA CGCTACCTTG CTATCAAAAT 
GACTTCTGGG CAGACGAGTA TGCCGGGAAA GGAAGAGGAC GAAGAAGAAT GGATCTTTAC 
TTTGCGGATT CCTTCGTCCT CCGCCAAGGA TGCTGCTGGC GGGGTCTACG AACTTAGTCA 
ATCCCAGCCG CCACCGACCT TATCTACTCA CGCTAGCAGT AGTGGTAGCT TCATGAACAC 
CAACAATAGC AATGATTCTG TTTCTGTAGA CGAAACGGCT GAGCAAGAAG CCCTCTTGGT 
TGCGGGGGCT GCAACACAGC AGATAATTCG ACCGCCTTCT CAGCACTCAT CCGCGAACCG 
TAACACCGAC TGCGCTACCG ATATCCCGTC TGGTTGGACT TGGCAAAGCC CTTATTGGAG 
TTTGCAGTCT GATGTTGTCC TGCAAGCGAC TTACCGTCCG TATTGGCAAG CCCTGCCCGA 
GTTCACCAAT TGTCGGGCCT GCCGAGCATC AGCCTACTGT CGGACTCGTT GTTGTCGGAC 
GTGTACTGGA ACGCGCGCTT TGGAGTTTTA TACCACTGTT TGGACGACTC AGGATGTCGT 
GAATGTGGAG GTGGTAGAAG AATGTATTGA AGTCGCAGGG GTGGGCCCGT GTCGGGCTTT 
GCGAGTGCAT TTGACACCGT TGGATACAGC CTGTTTGCCG GTCATTCCAG ATGCATTGCA 
GAAAGCCTGG GAGGGCCACG TCCATAATAT GCGCCAGGCC CACGATTCCA ACCTTAGCAA 
CAAAAATTCC TCCTCTCACA CCGCAAGCAA GTCAGATACG GTCGCCGGTC CTACTATAAT 
CTTTTGTTTG CCTACCAAAC AAGTTGATCC CCCTTTATTA TGGAAGGTAG AATTTGGTGG 
TGCTAGCAAT ATGTCACAAA CGCCTATTGC TCTGGAAAAT CTGACTGTTT TGGACGGGCA 
ACTGCAGCAA TTTAGGAACA CCGTTCCCTC ACCCACACAT ATTTACATTC ACGGATATCA 
GTCTTGGTCT TTTGCCGGTT CTATTGTGAA AGGGCAAGAT CAACCGCAGT CGGCCATGCC 
CGACTTTTTA AGTCGGGCCT TCAATTATGG CGGTTCGCCT CCACCCGTCT CCGACGATGT 
TCTTACGTAC GTGCCACCCT TGTCGCATAA TCATATTCAT CGCGACAACG ACGGCGATGC 
CTACACGGGC CCGCAATCCT GGAAAACACA TTACCAGTCC GACTTTTTTA CTTGCGTCAC 
GTCCGATGGA ACGATTCCGT CGTTTTGGAC ATCACGTCGC GAAAAGCAAT TTCCTTTTCA 
AGCTTTGGAC GAGACAGGTG GACCCGGACT AGTATTGGGG TGGCTGTCAC AACGCGAACA 
GTACGGCGTC ATTATGGCCG ATGTGGATTT AAGGCGGTAT GCCATGCACG TTTCCGGGCA 
CGGACAAATA ATTTGGGGCC GTGGCTCTGG TTCGACAACC ACAAATACCA TTGCTCTAGA 
GACTGATTGG GCCTATGCAC AACTGATCGC CCCACATTCA TACGACGAAG AACCCATGGT 
GCACTACCTC GAAGCAGCAG CGGGTTACAA TCAAGCCCGA CCGCTCCGCA ACGGCTCGTT 
ACTCACCGGG TGGTGCTCAT GGTACCATTT TTACGAAAAT ATTACGGCCG GTACGCTAAG 
TGAAAACGTA TCCAAACTAG CAGCTCTGAA GAACCGAGTC CCAACGAATG TGGTTGTAGT 
TGATGATGGG TATATGACAG CTTGGGGCGA CTGGGATTCA GTCAAACCCG GTGCCTTTCC 
GCAAGGCATG GCGGCTGTCG CTCGTGATAT TGTTGCACAA GGTGGTATGC GCGCCGGATT 
GTGGTTGGCC CCGTACGCAG CCGACAAGCA CTCTCGTTTG GTAAAAACCC ATCCCGATTG 
GATTATTCGC AACGACTCTG GTATTCCGGC AAATTCATCC AATTGTGGAA AGTTTTTTTA 
CGGACTGGAC GCCACCAATC CAGCTGTCCG GACCTATGTG TACGAATGCA TCCGACGTGC 
GGTACACAGT TGGGGTTTCG ACGTCCTTAA GATTGACTTC CTTTACGCCG CTTGTCTGGA 
AGGCAACGGT AAGCACGATT TGTCGCTGAG CCGGGCGCAG ACGATGGATC TCGCCATGCA 
AGCCATTCGA GATGCTGCAG GTCCCAATGT GTTTTTGATA GGCTGTGGTT GCCCAGTTGG 
ATCTGGTATC GGCTACGTGG ATGGCATGCG GGTTTCAGCT GATACAGGTC CAACTTGGTA 
TCCCGCTTTA CCGCTTCCGT GGTGGGATCA TGGGACTCTA CCTTGTTTGC GGTCAATGGT 
CCGTAACAGT ATGAGCCGAG CACCGTTGGG ACATCGATGG TGGCACAACG ATCCGGATTG 
CTTGCTATTG GGTGAAAGCA CCCGCCTTAC GGACGAAGAA GTAGCGAGTG CGGCCTCGGT 
TGTGGCCATG ACGTGCGGTA TGATGCTTCT TTCAGATGAT TTGACCAAGG TCAGCGTGGC 
GCGGACCAAT ATTTTGACCA AAATTTTCCC CATGACTGGT GTTACGGCCG TTGTCTTAGA 
TTTGCACAGT GCGAGTGACG GCTTGCCAAG TTTATTGCGA CTCTGGTGTA CGGACAAGTA 
CGACTTGTTG GATTCGTTTC GTGAGCGTAT GGTGGTGAGC GCGCAAGACC ACAATGCGGA 
AGCGACTTAC TTTGCGCGGC AGTCGTCATC GTATCATCCT GATAAGGACC AACAGCATCC 
GATCGAACGC CAACGTAGCT GTATTCACGT GACAAAAGGT CTGGGAACGT GGACGGTTGT 
TTCGGTCAGT AATTGGTCCG ATCGGACCGC TGTGGTTAAC TTACCTCCTC CTGCTTTGTT 
ACCTCCGCCC ATGACTGGAT GGGAGCAAGG CGATGAGGAG CCAGAATCAT TTTTGCAGAC 
TCCTGAAGAA GTTGACTGTG AGCAGCACGG TTGCCACGCC TTTGGATTCT GGTCGTCCAA 
GTACACTTGG TTGCCCAACC AAAAATACAA CGACAATGGG CAAGGCCCGG AACGAATTCT 
TCGTCGAAAG CTAGTTGCTC ACGAGACGGA AATCTATCAT ATTAAAGCCG TAACACCTGA 
CGCAGCGCAA TACGTTGGCA GTGATTTGCA CTTTTCCTGC GGACACGAGG TCCTGTACTT 
TCGGGCACAG AAGAATCAAG TCAGTGTCAC TCTCAAAACG AAATACCATC GTGTCGGGCA 
CATTTTCCTT TTCCTCCCCT GTATTAATAC GAATTCTGTC AAAGTGACTG TCAACGGAGA 
AGCTGGGCGA TGGCATGCGG TAGGAAATGT ACCGAACGGG CACGACAACG GACATGCCCA 
ACTGATTGGA CGAGTCTTCC GGGTGGCGGT CGTCGTGCAC GCCAATGGCC GTCCACAAGA 
TGGACAAGTC AAGGTTGAGT TTTAA 

 

Protein sequence

MTSGQTSMPG KEEDEEEWIF TLRIPSSSAK DAAGGVYELS QSQPPPTLST HASSSGSFMN 
TNNSNDSVSV DETAEQEALL VAGAATQQII RPPSQHSSAN RNTDCATDIP SGWTWQSPYW 
SLQSDVVLQA TYPCLPVIPD ALQKAWEGHV HNMRQAHDSN LSNKNSSSHT ASKSDTVAGP 
TIIFCLPTKQ VDPPLLWKVE FGGASNMSQT PIALENLTVL DGQLQQFRNT VPSPTHIYIH 
GYQSWSFAGS IVKGQDQPQS AMPDFLSRAF NYGGSPPPVS DDVLTYVPPL SHNHIHRDND 
GDAYTGPQSW KTHYQSDFFT CVTSDGTIPS FWTSRREKQF PFQALDETGG PGLVLGWLSQ 
REQYGVIMAD VDLRRYAMHV SGHGQIIWGR GSGSTTTNTI ALETDWAYAQ LIAPHSYDEE 
PMVHYLEAAA GYNQARPLRN GSLLTGWCSW YHFYENITAA WGDWDSVKPG AFPQGMAAVA 
RDIVAQGGMR AGLWLAPYAA DKHSRLVKTH PDWIIRNDSG IPANSSNCGK FFYGLDATNP 
AVRTYVYECI RRAVHSWGFD VLKIDFLYAA CLEGNGKHDL SLSRAQTMDL AMQAIRDAAG 
PNVFLIGCGC PVGSGIGYVD GMRVSADTGP TWYPALPLPW WDHGTLPCLR SMVRNSMSRA 
PLGHRWWHND PDCLLLGEST RLTDEEVASA ASVVAMTCGM MLLSDDLTKV SVARTNILTK 
IFPMTGVTAV VLDLHSASDG LPSLLRLWCT DKYDLLDSFR ERMVVSAQDH NAEATYFARQ 
SSSYHPDKDQ QHPIERQRSC IHVTKGLGTW TVVSVSNWSD RTAVVNLPPP ALLPPPMTGW 
EQGDEEPESF LQTPEEVDCE QHGCHAFGFW SSKYTWLPNQ KYNDNGQGPE RILRRKLVAH 
ETEIYHIKAV TPDAAQYVGS DLHFSCGHEV LYFRAQKNQV SVTLKTKYHR VGHIFLFLPC 
INTNSVKVTV NGEAGRWHAV GNVPNGHDNG HAQLIGRVFR VAVVVHANGR PQDGQVKVEF