| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_50155 |
|---|
| Symbol | |
|---|
| ID | 7198854 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011695 |
|---|
| Strand | + |
|---|
| Start bp | 212901 |
|---|
| End bp | 214651 |
|---|
| Gene Length | 1751 bp |
|---|
| Protein Length | 525 aa |
|---|
| Translation table | |
|---|
| GC content | 50% |
|---|
| IMG OID | |
|---|
| Product | chitinase chitin binding glycoside hydrolase family 1 |
|---|
| Protein accession | XP_002184991 |
|---|
| Protein GI | 219129639 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.487357 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | CGAGAAGGGT TAACAAAAAC GATTCATTCG GATCCCATGA GTGTCAAAGT AAGACCGAAG
ACCGTCCTTT AACAATGACT TTCAAATGAC ATTTCCAGAA GCTCAATCGA CAAGTCGATG
CGCTCACAAA ACACGAATCT TGGCAAACCA AATCGCTTCC GAAATCCAAT ATTATGACGA
TTGCCATCTA CCAGTCGATT TTCTCGTTAA TTCTCGTTGG AGGATTTCTT TCTTCAACCT
CACTTGCTGC TACCTGCAGT GGGGGCACGA TAGGCGACGG TATCTGTGTC GACAACACCT
TGTGCTGTTC ACGATTTGGC TGGTGCGGAT TAGGTCCCGA TTGGTGTGAT GAAGGCAATA
CAGCATCCCC TCCTACTCCT GCTGCAGCTC CAACCATAAC AGGCTCACCG CCCTCACCGG
TTCCACCTAC AGTTCCCGTC ATACTAAATG ACGACTCTCG AATGATTGCC TACATGGGAA
ACTGGCATAC CTGTCCGACA GCCGCGCAAC TCACTCAGTA CACGCACGTG GTCTTAGCAT
TTGCAGTTTC GTATACTTGG GCTCCTGGTA AGAACCAATG TGATACACAG TGTAACATTG
CCACACCGCC TGTTTGCAAC AATGCACCGA ACGACTCTTT GATCAGCGAC CTACACGCCG
CTGGCAAGAA GATCATTCTC AGTTTCGGCG GTGCTGGTAT GGGAGGAAGC TGGTCGTCCT
CACAGGATGA CTGCTGGGAC TACTGTTTCG GGAAAGAAGA GAAGGTTGTT TCGCGCCTGA
CTGAGATTAT TGATGACATG AACTTGGACG GTATCGATAT TGACTACGAG TATTTTTACG
AAGACAATCA GAATGGCTCG GGATTTACTA AGGGAGCACA AGCCCAGAAG TTCCTTACAG
AAATTACTGT CGGCCTGCGC AATAGTCTTC CAGCTGGATC GATTGTCACC CATGCTCCTA
TGGATTCTGA TTTGGTTCCG GGAAAAGCAT TCTATAAGTT GTTGAAGGAT ATCAGTGGAA
CTTTGGATTT CATCATGCCA CAGTATTACA ATGGCCTGGT GCGTCCAGCC TTGGATGGAG
TTGATGGATC TGGATTTGGG CAAGAAACAT CTATATCCCT TTACTCTCAG TTGGCGAACG
ATTATTTTGG TGGTGACGCC ACCAAAATTG TATTCGGGTT CTGCATCAAG GATTGTAGTG
GGACTAACAG CAATGCCAAC GCGGTTCAGG CGGCAGCGGT CATGAGCGAA TTAAGCAGCG
TGTACGACTG CAACGGTGGA GCCTTCTTTT GGGTTGTCAA TGATGATACT AATGGGTCTT
GGTCCTCCCA AGTGAACCAA GTTGTGCAGC TCAATGCTGG GTGTGCGGCG TCAAACTCTC
CCAGTACTGT CGCTCCCTCG TCTTTTGTTG CCACGACCCA TCCTAGTGCT GCTCCGACCA
AACAACCGAA CCAAAGTCCC ATGGCTGCAC CCACGAAGGG AACGCCGAAC CCGTCTTTCG
CACCCACCAG CAAACCTTCG CTCCGCGCCA CTACTGCACC CAGCAACGCA GATGGTTTCG
AAGAAACCAA ATGTTGCCCG CCGGACTTCA CAGGACTGCG GGCCTTGGAC AATTGTTCCA
AGTTTTTCCA CTGTGTGGGT GGTGCCGTTG TGGGTCCAGA GACAAGTTGT GGCAGTGGGT
TGTTGTTTGA CCAGAAGTTC ATGTACTGTA ACTGGAGTGA CCAGGTGGCT TGTGTTCCCA
ACGTTTGTTA A
|
|---|
| Protein sequence | MTIAIYQSIF SLILVGGFLS STSLAATCSG GTIGDGICVD NTLCCSRFGW CGLGPDWCDE
GNTASPPTPA AAPTITGSPP SPVPPTVPVI LNDDSRMIAY MGNWHTCPTA AQLTQYTHVV
LAFAVSYTWA PGKNQCDTQC NIATPPVCNN APNDSLISDL HAAGKKIILS FGGAGMGGSW
SSSQDDCWDY CFGKEEKVVS RLTEIIDDMN LDGIDIDYEY FYEDNQNGSG FTKGAQAQKF
LTEITVGLRN SLPAGSIVTH APMDSDLVPG KAFYKLLKDI SGTLDFIMPQ YYNGLVRPAL
DGVDGSGFGQ ETSISLYSQL ANDYFGGDAT KIVFGFCIKD CSGTNSNANA VQAAAVMSEL
SSVYDCNGGA FFWVVNDDTN GSWSSQVNQV VQLNAGCAAS NSPSTVAPSS FVATTHPSAA
PTKQPNQSPM AAPTKGTPNP SFAPTSKPSL RATTAPSNAD GFEETKCCPP DFTGLRALDN
CSKFFHCVGG AVVGPETSCG SGLLFDQKFM YCNWSDQVAC VPNVC
|
|---|
| |