| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_50113 |
|---|
| Symbol | hPng1 |
|---|
| ID | 7198915 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011695 |
|---|
| Strand | + |
|---|
| Start bp | 78720 |
|---|
| End bp | 81019 |
|---|
| Gene Length | 2300 bp |
|---|
| Protein Length | 681 aa |
|---|
| Translation table | |
|---|
| GC content | 55% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002184963 |
|---|
| Protein GI | 219129581 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.424415 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | AGAGCTTTAC AGTTGCTTGA TCGAAGACCA TGGGTTTGTC CGCACTCCAA TAGAGAGAGA
CACACGCACT CACTGTCATT CACGCACACA CTCTTTGAAC TACGGGTATA TCCTTACATA
CTCGCCGTCG TTATTGCCGT TGCTGTCGCT ATCGCTGCTG CTGTATTCGT TTGTTGCTCT
CGCTGTGACC GTCGCGTTGT TTCTATTATT GTATTGTGTA ACATGCCGGC CTTACGCACA
CGACCACTCC GTCGCAATGT TGTGGTGTGG GTGGCATTCG GCTACTGGAT CGGCAGCTAC
GGCAGTGGGT GTCACGGCAT GAGTTTCCAA CATCCGGTAC CGCACGCATC GAACGATCCC
TCGCCGCAGG CTTCCGGGAC GACGACCGAG GCGCACACGA GTTCCGGGTG GGGACGAAAT
ATCGAAGCAC GTTCCGCACG GGGTTCTCCG GCACTCACCT TACGCAGTAC GGCTCTTTTA
GTGAATCGCA GTTCCCCGAC GAACGCGGAC TCCGTCTCGT TGTCACCAGC AGCAACAACA
TCAAGACAAC CCTTTTGGAA ACGTTGGAGA CTCCCCTTGG TCCAAACGCG TCCACCCGTT
AGCTGTGCTG CCGCAGCAAT GTCGACAGAA ACTCCGTGGG AAGACGGTGG GGATCGAGAC
CGACGACGAC ACCCAACCGA CGCTTCGTCC ACCGCGTGTG CCGAACAACC GACCCACGGC
GTCGCCACCA CCCCGGGTTC TCCTTTGGTG CATTGGTCCA CGCGCCGTGA CCCCACCCGA
CCTTCTCCGA CTCATGCCAT CAAGGATCCG GTTCCCACCA ACAACAATGA CACAACCAAC
AACGACATCA AAAACTCGAC TATTACAACT ACTACCGCCG CCGCCGTACT CGTCGAAACA
CTCCCCTCTA CCGTCGACGA CACGCAGGAC CAAAACATCA CAAAGCCCAC CAAAATACAA
ATTCACACCT ACCTGGACCC CCGCTCACAA CACGTTTGGA AGGCTCTCAA CACGGCCCCC
GAAAAGTTTT TCGCCTTTTT GAAATACTCG GGTCTGAGCC TGAAGCGTAA TGAGATCCGA
ACGGAACAGC TGGCCGTAGA CGGACCGGCG GTCAACGCGA CCGCGCAAAC CACAATCCGC
GACGAATGGC GTCAGCTTTG GAAGGAGGGT CGGCTGTTGA CGGACCGTAC CGAACTTCTC
GCCGTATACC CCAGCGATCA GGACGCGGCC ACCGCCACTC CTACATCCGT AGCCCCTAAT
CGCGGCGGCT TTACGGATTT GCTCTCACTC TATACCGAGC GAGTCGCGGC TATTCTAACA
GACGAGAGGA CAGACGCAGC GCGCGACGGC GGCTTTCTGG TCGCTTGGCT GGAACAACAT
TACGGCGTAG ACCGCATTGC TCAACTCCAG GCAGGTGCTT TACAAACGCG GTCGCACGAG
CAGCAGTTGA AACTTTGGAA GGCATTTTTG GAATGGTTCC GCTCCTATTT TCCCTATTTT
TATGATCGAT GCGAGTCTTG TCAGGCATCC ATGAAGGAAG ACACTGATCG GAACGCCAGT
TCAGAACCGG ATAGCAATGC GGATTCTGAC GAGCCAGATC ACCAGACGTT TGTAGGGTAC
GTCTATCCAC GAATCGACGA ATTAGTCGGC AAAGCCTCAC GTACAGAATT GTACCAGTGT
CACAAATGCG GACATTTTAC ACGCTTTCCG CGTTTCAACG CAGCCTCGCA CGTAATGGAT
CATCGTCGCG GTCGCTGTGG AGAGTATAGT ATGTTGCTGT TTCGTATCTT GCGAGCTCTG
GGACACGACG CACGGTGGGT CATTGACTGG GCGGATCATG TGTGGGCCGA AGTTCTGCTG
CCACCCGAAA CGACCACGCA CCACGAGGCG GAGCAGACAC CGGGTACCCC ACGATGGGTC
CACATGGATC CGTGTGAAGC CGCGGTGGAT CATAATTTGC TCTACCAGGA GTGGGGAAAG
AAGCAAACAT ACATTTTGGG CTTTTATGCT CCTCGCGATG GGACCCCGTC GACTCCACTG
ACGCAAGAAG CGAAGCCCGT TGCGGATGAT TCTACTACAC GTCTCTTGCC AATGATCGAA
GACCTCACGC ACACGTATAC ATCGGATTCG TGGATCGACA TTTGTCAAAG GCGCGACGAG
TCGGAGGAGC AAGTCAAGAC TTCAATTAGC ATCGCTGTGA TGGATTTGCA CGACCGACTG
ACTCGATCTG AAGAGAGCGA CCCACATTTA ACCACGCAAC AGAGATAGTC CAATCCGCAC
CCCATAGAGA TGAATGAACA
|
|---|
| Protein sequence | MPALRTRPLR RNVVVWVAFG YWIGSYGSGC HGMSFQHPVP HASNDPSPQA SGTTTEAHTS
SGWGRNIEAR SARGSPALTL RSTALLVNRS SPTNADSVSL SPAATTSRQP FWKRWRLPLV
QTRPPVSCAA AAMSTETPWE DGGDRDRRRH PTDASSTACA EQPTHGVATT PGSPLVHWST
RRDPTRPSPT HAIKDPVPTN NNDTTNNDIK NSTITTTTAA AVLVETLPST VDDTQDQNIT
KPTKIQIHTY LDPRSQHVWK ALNTAPEKFF AFLKYSGLSL KRNEIRTEQL AVDGPAVNAT
AQTTIRDEWR QLWKEGRLLT DRTELLAVYP SDQDAATATP TSVAPNRGGF TDLLSLYTER
VAAILTDERT DAARDGGFLV AWLEQHYGVD RIAQLQAGAL QTRSHEQQLK LWKAFLEWFR
SYFPYFYDRC ESCQASMKED TDRNASSEPD SNADSDEPDH QTFVGYVYPR IDELVGKASR
TELYQCHKCG HFTRFPRFNA ASHVMDHRRG RCGEYSMLLF RILRALGHDA RWVIDWADHV
WAEVLLPPET TTHHEAEQTP GTPRWVHMDP CEAAVDHNLL YQEWGKKQTY ILGFYAPRDG
TPSTPLTQEA KPVADDSTTR LLPMIEDLTH TYTSDSWIDI CQRRDESEEQ VKTSISIAVM
DLHDRLTRSE ESDPHLTTQQ R
|
|---|
| |