Gene PHATRDRAFT_50003 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPHATRDRAFT_50003 
Symbol 
ID7198705 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePhaeodactylum tricornutum CCAP 1055/1 
KingdomEukaryota 
Replicon accessionNC_011694 
Strand
Start bp110281 
End bp111648 
Gene Length1368 bp 
Protein Length455 aa 
Translation table 
GC content50% 
IMG OID 
Productpredicted protein 
Protein accessionXP_002184826 
Protein GI219129292 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.1229 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTTGGTC TACGTTTTGC ACACGTTGCT GTGATGCTCG TTGTGGTCGT AAAAACGGTC 
CTGGTCAGCT TCCACAACGT GAAATCCATA AAGCCAGTAG TGTCGCAACA CATTCCCGGG
CAGCCGGAGC GAGCGGCTGT TGTTTCTATC AACGAGGATA CGGGAGTAGG CGTTCCCAGG
CGACACACCC CAACCGGAAA AGCGCCGTCC GCCAACTCAA CCAGGAGTGA CACAATAACC
GGAAAAGCGC CGTCCGCCAA CTCAACCAGG AGCGACACCA TAGCCGGAGA TGCACCGTCC
GCCAACTCAA CCAGGAGTGA CACCCTAACC GGAAAAAGAC CGTCCGCCAA CTCAACCAGG
AGGAGCACAC GCATTACTAC TCAAAGAACT GCGACAGAAT TTAGTGTCAG TCCGACGACA
CAGGAAATCG GTATGAAGCC TGATTGGACA AAGCTAATAC CGCAATGGTT GCACAATCGA
AATACAACCA GCGTGAAACT GCTGAGAACT GGGGCACCAG ACATGCCTTC AGGTGCTTTC
GTGCATATCG GTAAAACGGG TGGATCAACG CTGAGCTTGC ACTTGCGCAA TGGCTGTCAC
TCCTTCATCA AACAGCCGTG TAATCAGCTG TCCCTGAACG AGGTGGAATC GCATGTATCC
CGCTTGACTA CGTACTATCA TGTGCCTGAC TTTGCCAATC TTAGGCGAAC CCGTCACCAT
CTGTTCTATG TCCTTAGTAT CCGCGACCCG TTAGCTCGGC TGTTGTCCGT CTTCACGTAC
ATGCATCCGG ATAACATCAT TGCCCGCGGC GCTTGTCAAT GGAATATCTG TGAAACCGAA
AGTATATGGA AATGTTTTCC AAATTTGGAT GAGTTTGCTA AAGCCCTCAA CTTATACCGA
GAAGAAAGCA AAGGACAAGA GGCTGTGGCA GAGAGAAGAT GCGTACAGGG CGCTCAAAGC
TTTATTCGTA GTAGCGACAA TGCACCGGAC CACTTTCGAC ACAGCCTCGA GGCGATTGTG
GAGGAATACA TGCCACCAAA CGCCATAATG AATTCGACCA TTCTTGTGGT AAGAAATGAA
CATATTTGGG ACGATTGGAT TTCCGTTAAC CAATGGCTTG GTCAGGAAGG AAAGGTGGAC
GCATTTCCAG ATAACAATGT ACGTGATTTT TCACACATGA CGCTCCCCGT TTCCAAAAAC
TTTTCCGAGG AATCTCGCAA AAGCTTATGT GCCGGTCTCC GCGATGAATA CCGAATCTAC
ATGACCATCC TCTCAAAGGC CGCCAATATC GGGCCAGTTG AAATGGCGCA AAGCATCGAT
TTGGCTCACA GAAACTGCCC GTCTCTTCAA TTTTCTTCTT TTGTTTGA
 
Protein sequence
MLGLRFAHVA VMLVVVVKTV LVSFHNVKSI KPVVSQHIPG QPERAAVVSI NEDTGVGVPR 
RHTPTGKAPS ANSTRSDTIT GKAPSANSTR SDTIAGDAPS ANSTRSDTLT GKRPSANSTR
RSTRITTQRT ATEFSVSPTT QEIGMKPDWT KLIPQWLHNR NTTSVKLLRT GAPDMPSGAF
VHIGKTGGST LSLHLRNGCH SFIKQPCNQL SLNEVESHVS RLTTYYHVPD FANLRRTRHH
LFYVLSIRDP LARLLSVFTY MHPDNIIARG ACQWNICETE SIWKCFPNLD EFAKALNLYR
EESKGQEAVA ERRCVQGAQS FIRSSDNAPD HFRHSLEAIV EEYMPPNAIM NSTILVVRNE
HIWDDWISVN QWLGQEGKVD AFPDNNVRDF SHMTLPVSKN FSEESRKSLC AGLRDEYRIY
MTILSKAANI GPVEMAQSID LAHRNCPSLQ FSSFV