Gene PHATRDRAFT_50002 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPHATRDRAFT_50002 
Symbol 
ID7198704 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePhaeodactylum tricornutum CCAP 1055/1 
KingdomEukaryota 
Replicon accessionNC_011694 
Strand
Start bp105504 
End bp109800 
Gene Length4297 bp 
Protein Length1122 aa 
Translation table 
GC content50% 
IMG OID 
Productpredicted protein 
Protein accessionXP_002184890 
Protein GI219129426 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.736142 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTGTGACG CCCTATGCGG GACCGGAGCC CCAATACGGG ATTTCTTTGA TCTTGCAGGG 
TTCGACCCTC CATTTCCGAC CACCAACTGT ATTATAGCAG TTACGGCAGC CTTTGGATTT
GGAATCCTTC CGCCGCGACC CCGTCGAAGG TATCACTTGC TCTTTCCTGC GTGTACATTG
ACCCTCTCCT CTTCTCTCTT CTTATCATCA ACTTCGTTTG CCTGGATGCG ATCTTCGCTT
GCTGGAACAA CGAATGCTTT AGCTCGTAGG CGAAACGAGG AATGGAAAGC AGCCGCTACA
ATCTCAATCC GATGCGCTCA CAGGCAGCAC CCTACACAAT CGGCACCCAC ATCCGCGTGT
ACGTGTGATG TGTCGTCTGG ATGGAACCCC GTGTCGTGTC GCTGCTATTC TACGATAGAA
GCACTAGGGA AACAACTAGG GCGAACACGA CCCTCACTGC AATTTTGGTT CTCAGCACGG
TCGACGGCTG TGCAAACACG ACAGTACGCA AACGGCGATT CGCTCCACGC TGGTGCGGCT
GCTCTTCGCA TCTCCACAGA AACACCGAGT GCGAATTCGG GGAGCGGAGC ATACGATAAG
CGGAACACGG CTCTCGTGGG TCGTGGAGCT CTTCGCACTT TTGCTAGCAC CGGAAGCACC
TCTGTCCACG ATTCTGTAGA CACTGATGGC AGCCTCTACC ACACAAATGA TGCGGCTGAT
GGTGTAGTCG GATACGGAAG CGAACTGGCG CAGGTGCGAT CCCATACACA ACATCTTCTG
CACGATCTAC CACCAGGTTT CTTGTCAGGG AACTACTTGA CGGAACCCGT CCTCTCCTGG
GCTGATGCCT CCAAAATTTT GTACTGGTGG ATCATTCGTA AGACGCCAGA ATCTGTCGAA
CGTAGCCTGG AAATACTGTC AGCCTTGGTG CGCGAAGTTG ATCGACTACA GGTAGAAGAT
GAGGACGAAG ATACCTCTAT TCGCTTTTTG AATCCGTCTC TGGTCGAATC AATCGTCATC
AATTGGAGTT TTTGCTGGAA GCGGTACAAT TCTATGAAAG TTACGCCAAT TATACTCTAC
GAGAAGTTGC AAGAGTGTGC CGCACAACTC TCGTCACTCG AGCTCTCCGG CAAAGCATTG
ATACATATCA TCCACGGAAC AGTCTTGGCG GAAAGGGAAA TTGTGAAGTC TTCTTCGAAG
ACGTACGCCA CGGCCTCGTT TTGCGACCAA GTGTTCCGCA GCGCACTTTT GTTGCCCTAC
AGTCCCGACA CGCTGACGCT GACGCTGAAT CTGTGTCTCA AAGCCTGGTT GCGAAGTGGA
CATCGCAATG GTTACCGCGG CGACCAGCGA GCTGAACATG CGACCCAGTT GTTCGAGGAC
GCTTTGCAAG CTGGAGTCGC TGTGGACGCG ATTTCCTATA ATACAATGTT GCGTATCTAC
GCCGATTGTG GTAAGGGCGA ACATGCTCAA TCCCTCCTGG ATGAATGGTG TCGAGCTTAT
AACCGTGATC CCTTTGTCGT CGCTGAACCC AACCTACTGT CTTTAAACAT TACGTTGGCA
GCCTGGTCCA AATCGGCCAA ACACACTCCC GACGCCGCCT CCCATGCACA AACGTTGTTG
CGCCGCGTAT GGGATCCATA CGACGACATT GGCAAAATCG GGATTCAACC CGATACTGTC
ACCCTCAATA CCATTCTATC ATGTTGGGCT CGATCAGCAT GGCAACCATC CAATACCGCC
GAAAAAGCGC AGACTATGTT GCAAGAAATG AAATCTTTAT TTGATAGTGG TGAATTGGAC
GTGCAGCCAG ACGTATACTC CTACACAACC GCGATGAATG TGTTTGCTAA AGCCGGTCAT
CCAGAATCGG CTGAAGAGTT GCTTAACACT ATGCATCAAA AATACCTTGG CGGCGACAAA
AGAATGATGC CAACGTCTCT TATGCATGTT TCCATCCTCG AAGCATGGGG GAGATCTCTA
CACCCTGATC GGATCGAAAA GGCGGAATAT GCTTTGTCCC GAATGGAAGA ATTGCGCAAT
TGTGGATTCT TGACGACGCA TACCGCAACA CATAGCAATG ATTCAAACGC GGCAGCCGCT
TACAATGTTA TGCTGAATAC CTACGTCAAA GCCGATGCCG TAGACAAGGC GGAAGCACTG
TTGCGTCGCA TGATGGCTCA TACGGATCCC GTTCTCCCCC CACCCGACGG CCGGACTTTT
TCTATTGTTA TCCTTGCCTT GGTTCGTTCG CCTGATGGAA CTCTTCGTGC CGCGGAACTA
CTAGATAGCG CATTAGAGCT TTACCGGAAA TCGGGGCCCG GAGTCTTTGA GTTTGATATC
CGACCCATCA ATGCTGTTAT CAGTGCTTTG AGTCGCAAAG ATAGCACCGT AACACAAGCT
GTTGCCTTAA TACATCGCAT GTTGGATTGG GTTGAACAGG GCGACCAGAG GTTGCGACCG
TGTGATGCGA GTTACGGACC GTTGCTGTTC GCATTACATA AAGCTCAGCT TGATATTGAC
GGAGCGCCAT ATATTGCTGG CATTCTTGAG CGATTTGAAA AACTCCATGC AAGCGGTATC
TTGCCAGCCC CTCCTAAATA TGAGGCATAC AAGTTTCAGG TCTTGGCATG GAGGTTTTCC
AAGCAACCGA ACGCGGCCAA GAATGCCCAC GCGGTGCTCA AGTTTTTGAG CAACCAAGCT
CGACAAGGTA AAAGGAACTA TCAGCCTGAA GCACTACTAT ACAATGCCGT ATTGGAAATA
ATGGCCATGC ACCGATTACC TCTACAAGCA GAAAATTTGC TCCAAGAGAT GTATAACGAC
TACTTGACCA ATCCGATCAA TGCCAAGCCA AATTTGCGAT CTTTCAATGC TGTCCTTTGG
GCTTGGGCCC GTTTAGAACA ATCTTCAGTA GCGTTAGAAC ACACTCGTTC GCTGCTGGCT
CAAATGCAGC GATTACATTC GTCGGAAGAC GAAGCCAAAG GACTCGATGT TGAGCCCGAC
ACCGTTTCGT ATAATTGCGT CATGAGTGCC TGGATGAATT CGAGACACGA GGATGCACCG
ACGCAAATCG AGCATATCTT CCGGCATTCG CTTTCGGTTG AATCTGTCAG AACCAAACCA
GACCAGTACT CTTTTACGTT GGTCATACAG GGATGGCTGC GGGGTCGTAA TATTGAGAAA
TGTACTGCCG CCTTGGAAAA CATGTGGCAG GCGTATACGG AGAATCGCAT CCGTGTATAC
CCCAATCCCA GACTCATACA ACAGGCAATT GCATTGGCGA CAGTTGACGA TGCCGCACAG
GTTGCACGAC TCGAAGCCTT AATGCTCAAG ATCAAGAAGT TGCCAGTCCG GCACAGACCG
ACTGCCTGAC AGAACTCACG CCAGCGTGCG AAGCCGTCAA CGGGGTAAAG AAGTGCAAAG
AAGGTATATT ACAGAAGCCT GTTGTAAGCA AATATAAATT GCTCCTTCCT GTATCTTTCT
GTTGCAGTAT ACGTGCTGAC TGTCAGTAGC ATTATCTCCA ACAAATATTC TTTGGAAGTG
GTCATTGACG ACTAGTCGCA ATTTCTTTCG TCAAACGCAA CAGCTTCTCG GTACAAACAC
TCGTGCCAAA CGTCAAAGCT CCATAGTCGC GTGTTGTCTG AGTCGCTATG CTTCGCCATT
ATTTGTAGTG GTTGTCCATC AAGGCAGTCC TGCAAATGGA TACTGCCGAA GAGGGAGCCG
AGCTCAATGG AAAACTCCTG AAAGTTGAAC AAGTGCTGCA GAAATTCAAA CGTATATATG
TCCTCCGGAT TAGTTCGCAG ACTTGCCTCC TTGCTAGCAA ATACTTTATC AAAGCCCTTT
TTCCGAAAGC GAGCCCGTGA CATTGTTGTA CTAGCCGAAC TTGCTTTTCC TAGCAAAGTT
TCTTCGTCAC GAGTTGGTTC TTCTAACTTG GCTTCAAGAT CGAATTCATC ATAGTTATTC
TCAATACTTG ATGGGGTATT ACGCTGCACC CTGAGGGATT GCGCCGTGCT ACCGAGTGGC
GTCAAACTAT GGGGATGGGA ACCTTCTAGT CGCGCGTCTA GTTGTGGTGC AAAGAAGCCA
ATGACTTTCA TGGCCCCTTT GACGACATAT TTTGCGGGCA AACGAGCCGT CTTGCGAGTC
AGCTCCAAAC CCGCCACACA ACGTGTCCAC GGGATACTTC GCTTGAAACG ACCGCGCATT
ACCACTTGGT AACGTCGGTT CATACCCACA AAGTACCCGA TCTGATCGTT GTATGGTTCC
GGTGTAGTAC CCAGTGTGTG ACGTAACCGG ACCAGCA
 
Protein sequence
MCDALCGTGA PIRDFFDLAG FDPPFPTTNC IIAVTAAFGF GILPPRPRRR YHLLFPACTL 
TLSSSLFLSS TSFAWMRSSL AGTTNALARR RNEEWKAAAT ISIRCAHRQH PTQSAPTSAC
TCDVSSGWNP VSCRCYSTIE ALGKQLGRTR PSLQFWFSAR STAVQTRQYA NGDSLHAGAA
ALRISTETPS ANSGSGAYDK RNTALVGRGA LRTFASTGST SVHDSVDTDG SLYHTNDAAD
GVVGYGSELA QVRSHTQHLL HDLPPGFLSG NYLTEPVLSW ADASKILYWW IIRKTPESVE
RSLEILSALV REVDRLQVED EDEDTSIRFL NPSLVESIVI NWSFCWKRYN SMKVTPIILY
EKLQECAAQL SSLELSGKAL IHIIHGTVLA EREIVKSSSK TYATASFCDQ VFRSALLLPY
SPDTLTLTLN LCLKAWLRSG HRNGYRGDQR AEHATQLFED ALQAGVAVDA ISYNTMLRIY
ADCGKGEHAQ SLLDEWCRAY NRDPFVVAEP NLLSLNITLA AWSKSAKHTP DAASHAQTLL
RRVWDPYDDI GKIGIQPDTV TLNTILSCWA RSAWQPSNTA EKAQTMLQEM KSLFDSGELD
VQPDVYSYTT AMNVFAKAGH PESAEELLNT MHQKYLGGDK RMMPTSLMHV SILEAWGRSL
HPDRIEKAEY ALSRMEELRN CGFLTTHTAT HSNDSNAAAA YNVMLNTYVK ADAVDKAEAL
LRRMMAHTDP VLPPPDGRTF SIVILALVRS PDGTLRAAEL LDSALELYRK SGPGVFEFDI
RPINAVISAL SRKDSTVTQA VALIHRMLDW VEQGDQRLRP CDASYGPLLF ALHKAQLDID
GAPYIAGILE RFEKLHASGI LPAPPKYEAY KFQVLAWRFS KQPNAAKNAH AVLKFLSNQA
RQGKRNYQPE ALLYNAVLEI MAMHRLPLQA ENLLQEMYND YLTNPINAKP NLRSFNAVLW
AWARLEQSSV ALEHTRSLLA QMQRLHSSED EAKGLDVEPD TVSYNCVMSA WMNSRHEDAP
TQIEHIFRHS LSVESVRTKP DQYSFTLVIQ GWLRGRNIEK CTAALENMWQ AYTENRIRVY
PNPRLIQQAI ALATVDDAAQ VARLEALMLK IKKLPVRHRP TA