| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_49998 |
|---|
| Symbol | |
|---|
| ID | 7198702 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011694 |
|---|
| Strand | - |
|---|
| Start bp | 97341 |
|---|
| End bp | 99470 |
|---|
| Gene Length | 2130 bp |
|---|
| Protein Length | 178 aa |
|---|
| Translation table | |
|---|
| GC content | 53% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002184888 |
|---|
| Protein GI | 219129421 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 56 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ACCATGGAAA CTCAAAAGCT AGTTATGTTA CAGTTAGTTA GCTATTGCCA AAGCATTTGA
AACTAGGCCA TTACCCAGAC CTGTTTTTCT ACACAGCTCT TGCCAGTGCA GATCAAAGGC
AGGCAGGCAT GCAGGCATGC AGGCAGGCAG GCTGTCTGTC TGTACTGGCT AGTCCGTCTC
GTCCATCTGG TTTGCACTGT CCTCGGAATG ACGAAAAGGA AAATTCCCCA ACACCGGACT
TTTGGTGATC ATTCTTTCTG GGACACCCAC TGCCAATCCT ACCCTGTCTT CCGTCGACGC
GACGCCGTCC CTGACCCCGT CCGCCTCTCG TCGGACTCCG CGATTGGAGT TACAGACTCC
GTCGTCGCCA ATACGGTCCC CGTCAATCCG TACCGCCGAA TCCGTCCCGA ATCAATCCCT
GCTCAACGGC GTGCCGGCGA TGGATCATCC GACTCCTGTA CCTCACCAGA GCACCGCCGA
GAGCCAAGCC AAAACAAAAC ACAGGCCGTG AATGCGCCTC TCTCGAAGGC CTCATTATCA
CGGACCGGAA GGAGCGCTCC GACCAGTATA CCGCCAAGTG CGGAAAGCAG AGACACCGGA
ATGAAAGTGC CTTTCCCCGG CACTGCCTAC CCGTCGGAGC AATCATCACC AACGCAGAGT
GTACAAGCCC TTTTCGTCCA TTCTGAATCC ATCCCAAGCA ATTCTTCGCC ACGCCTCCTC
CACTCCAACG GACCCCAATA TTGAGATCAT CCGCCAAGCA CTGCTGACTC CATCTTCCCA
GGGTATCACC TTGGCGGCGT AGGTCAACGC CGCCTCGAAC GGCACGCCGT CCACTGTTTC
GCAAACACTC GGGACAACTA CCACGCCCGG TCACGGGACC GACACGCCTG CTCCTGGCGC
GACGCAAGCG CACCGTAACG GATCCTAACC TTACCGACAG TAAAACCAGC CCCAACCGCA
CACAACAAGC TTGCACTTTG GCTTCCGTAC GCTGGACCGG GGGATCCGTC GTCACACGTG
GGATCCATAC ATGCTCCAAC AAGTTCGATG AAAAGCCATT CTGCATTGTG TTCATATAAT
TCAAAAACAC ATTCGCGTTA CACTTGCCAA TGAAGAGAGC TGTGTGTAAA ACCGGACATA
TTTGGGCATT TTGCCCGCTT GCAACCGTGC CGACACCAGC TGAAAGAATG TAGCAATACC
CGTTTCCATT TCTTCTTGTG GAAAGTGAAG AATCGCTGGT AACAGCACGT CAAATGTATT
GGTCGCTGTA GCTCTTGACG AAATCAGCTT TTGGAAAGCA CCCAATATGT GATTTTACTT
GTCTCAGCAA CTCTGGTGCC GCCTACGAAT GTAGGCTTGC ATCAGACATG ACAACGCCGA
ACATTTCCAC GCTTATCCCA AAGACCCGGC CGGGGTCAGC AACGGGGGAA AGAGTGCTTG
GTAGGCCGTA TCCAAGCCAT TAGGGCGATA CTCTAGTAGC TGTGCCAAGA CTTGGGAGGC
GGAAGGTGTG AACTCCTCAA TATCCATTTG CAGCACTATG TCGAATAGTT CGAACAAGAG
AGGTTGAGGT TCAAATAGTG CTGTGGCAGT GTGGTCTACG GAGCACCAAT GGTGGACCAT
GCTCTCGTAA TGCCGAGTAA CATTGGAGTA TCGCACATGA AACAGGACCA AGTGGTTGGT
TCCGTCCTTT TCCTTCACCA CGAAATGTGG ACAGTGTGCC GTACCGTTGG CATCCTTCCT
TGGCTGCCAT CTCATGGCGT ATGGTTGTCA ACACATGGAG GCCATCCAGA CGATGGGATC
CCGAATCGCG ACGGCAGCAA AACATTGTCG GCCTCGAGGT CTTTGTCGTG AGCCGCTGTT
GAAATCTTCG TCGTCCACTG CCGTGTGCCT ACCTCAAGGC ACCTGCCATC GTATGCCCAG
TGATCCAGCA GGGCCGTAAA CCTTTCTTGC GGAAGGAAGG TCGCAATTTT GAAGCAAGAG
CGCGGCCAAC AGATATATAT ATAACTCGCT TTCACGTTCG CTAATGTAAG TCCCTGTAGT
TTGCACCAGG CGTCATCACG TTCCTTGACC GTGACCTTAG AAAACCCCCA GCTCCTGCAT
ACGCAATAGG CGCTCGTCCT CTGTGGCTTC
|
|---|
| Protein sequence | MTKRKIPQHR TFGDHSFWDT HCQSYPVFRR RDAVPDPVRL SSDSAIGVTD SVVANTVPVN
PYRRIRPESI PAQRRAGDGS SDSCTSPEHR REPSQNKTQA VNAPLSKASL SRTGRSAPTS
IPPSAESRDT GMKVPFPGTA YPSEQSSPTQ SVQALFVHSE SIPSNSSPRL LHSNGPQY
|
|---|
| |