Gene PHATRDRAFT_49993 details

Gene Information

• Locus tag: PHATRDRAFT_49993
• ID: 7198777
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011694
• Strand: +
• Start bp: 67856
• End bp: 70742
• Gene Length: 2887 bp
• Protein Length: 756 aa
• GC content: 49%
• Product: predicted protein
• Protein accession: XP_002184822
• Protein GI: 219129284

Plasmid Coverage information

• Num covering plasmid clones: 4
• Plasmid unclonability p-value: 0.00340671
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TGCTGAGCCG CATACCATCG GCAAAAATTC CAATCATGAA CTGATGCTAC TCTTGTACGA 
TTTTAGTCGC TCAATGCTAC AGTTTGGGAG ACACAGCTCC TCCTCGATAC TCCGTCCTCC 
CACGGATCAC GATGGTACAA TGTCGAGTTG CACCACATAA AAAAACGGTT GTATTCTTTA 
CTATTAGGAC CAGGCAGGGA CCTAGACACG AAGGATCGAA AGTAACCATC CCTTGAGGAA 
AAACGCAAGA AAGCTCTTTA CTACTGTCCG GAGTCAAAGA ACGGTCCAAT TTGTGCAAGA 
TATTAACTGA AATGAAGGCC TTGATTCGCA AGCGGATTAT GTGGAGCAAG AGGACCGCCA 
CGACGGAGCA AAAGGCTTCC GCTTCTCTTT CGTTTGCCTC ACTGTCAGCA CTCCCTTCGC 
TGCGAGACAG AAAGGAAGCA ACGGTTTCAA CCCCCAATAC ATCAATCGGG AGTGTGGGTG 
AGGAAGAGGC TTGGACGTCG AAACGATCTT TTCGCTTGTT TGGGCGTAGG AATAAACGCA 
AGCTGAGCCC TCAGTCTCGT TCTGCCCCAT CCAGCATTCC AAGAACAACA AGGAAAATCG 
AGGCTTTCAG TAACGAGACA AACTCAGTTC ACAGTCGATT TCTTTCCCAA ATAAGGCGTC 
GTGCATGTAG CACTTTGAAC AACAAGGGCC GGAACGGACT AATAAGCAAA ACACATGATC 
TTCGGGACCC AGGCCAGTGT AAGGCCTTGA CGACACCGCG CGAAACTACC GTTCCCGCTA 
CGCATTAATC GCAACAGCGA TTGAAATGTA GTCGCGAAAT CGACGTCCTG TCCAATTGTA 
CCGGACTGGC TAAAGCATCA CAATCCGAGT CAAATTCGTT CTTGCACGAG GCAAGTGCGT 
TTGACGATGC AGCTAGAGCA GGAGGAGAGG AACTCCTTGT GGACGTGCCA GTGTCGAATG 
GTTATTCGGT CATGGCTAGT TTGCAACATT TGTACTGTGA ATATCTGTGT GGAGGCAGCA 
ATTCCGAAAG AGAGCATAGT TTTGATACGC AGTCCGTGTA CGACTTGATT ACCTCATATC 
TTGGTACAGC GCAATCTCAA GAACAACTCT ATGCTGGTCG TGCGAAGCGA TTGTTAGAAA 
ATCCAGCCGT TCTAGAAAAT TTTGAACGTG TTTTTGAGCG ACACCTGAAG GCGGGGTTAG 
CGGCCAAGCT CATGGAAGAA GACGAGGGGG AATTGGAGCA GTCAGGACCG CAATCTAGTC 
TTGCTGCGCC GTCTCAACTT CCGCAATCCC TACTGCGCTC ACGTTTCTTT ACTTATAAAG 
CTGGTTCTAA GCATCACACG CCTCGCCAAT CTCTCCGAAA ACCCCGCAAG GTTCAGCACC 
ACGTAAGTCT CCACCGCATC AATGCGGTAA ACGAGGCGGC GTCATCTGTG ACAGCTCCCG 
TCGCTCAAGC CACCAAGGGG CATCCGGCAA CTTGCCATTG TCAAAAGCAT ACCGCGCCGA 
TCGTCCCACC ACAGCTTTGG CCCCAAGGTC AACTTTTGAT GCGACCTACA CCTGGATCTG 
GCGTTCGTAT CAGAGGCATT CGTTTTGCCA AGGCAACATC GTCGTCGTAT TTGTGGCAAG 
CGTCCGACTA TCCGTCTGGT CAATCCCCTG TGACCTGGCC ACAAGCTTTG CAGGACCACT 
GGAAAGAGGC GAACGTGCAT ATATCTGCAA CTGCCATGCC AGAAGGTCAT GACGAGCTCC 
TGCAGCGTCT GCAGTCCTAT CGCATGTGCC CAAACTGTAT GATCCTTCCC GTGAATAATG 
GAAATGAGCC CGACGGAGAA TCGCTAGTGA CAGATTTTGA ATCGGACTTA TTTGTCGGCA 
CTATGCTGGT CCGGTTACGT CACACACAAG GTACTACACC GGAACCATAC AATGATCAGA 
TCGGGTACTT TGCCAATGTG AAACGACGTT ACCAAGTGGT GATGCGCGGT CGTTTCAAGC 
AAAGTATTCC GTGGACACGT TGTGTGGCGG GTTTGGAGCT GACTCGCAAG ACGGCGCGTT 
TGCCCGCAAA ATGCGTCGTC AAGGGGGCCA TGAAAGTCAT AAGCTTCCTT GCGCCACAAC 
TAGATGCGCA ATTGGAAGGT TCCCATCCCC ATAGTTTGAC GCCACTCGGT AGCACGGCGC 
AATCCCTCAG GGTGCAGCGT AATACGCCAT CAAGTATTGA GAATAACTAC GATGAATTCG 
ATCTTGAAGC CAAGTTAGAA GAACCAACTC GTGACGAAGA AACTTTGCTA GGAAAAGCAA 
GTACGGCAAG TAGTACAACG TCACGAGCTC GCTTTCGGAA AAAGGGCTTT GATAAAGTAT 
TTGGGAGCAA GGAGGCAAGT CTGCAAACCA ATCCGGAGGA CATATATACG TTTGAGTTTC 
TGCAGCACTT GTTCAACTTT CAGGAGTTTT CCATTGAGCT CAGTTCCCTC TTTGGCAGTA 
TCCATTTGCA GGACTGCCTT GATGGGCAAC CACTACAAAT AGTGGCGAAG CACAAAGACT 
CAAACAACAC GCGACTATGG AGCTTTGACG TTTGGCACGA GTGTTTGTAC CGAGAAGCTG 
TTGCGTTTGA CGAAAGAAAT TGCGACTAGT CGTCAATGAC CACTACCAAA GAATATTTGT 
TGGAGATAAT GCTACTGACA GTCAGCAGAT ATACTGCAAC AGAAAGATTC AGGAAGGAAT 
AGAATTTGTA TTCGCATGCG ATAGGCTTTT ATAATATACC TTGTGTGTAT GGATGTGTAG 
CTCATGTGAC ACTTTGGCAT GTCATTACAC ATCACAGACG GTGCATTTGT CGTTTGTCAC 
TACTTTTCTT TGTCAAGGAA TCTGTGGGCG TTTGTTTGGT TTAAGTAACA TAAACAGGAT 
TGCTACT 

 

Protein sequence

MKALIRKRIM WSKRTATTEQ KASASLSFAS LSALPSLRDR KEATVSTPNT SIGSVGEEEA 
WTSKRSFRLF GRRNKRKLSP QSRSAPSSIP RTTRKIEAFS NETNSVHSRF LSQIRRRACS 
TLNNKGRNGL ISKTHDLRDP GQCKALTTPR ETTRLKCSRE IDVLSNCTGL AKASQSESNS 
FLHEASAFDD AARAGGEELL VDVPVSNGYS VMASLQHLYC EYLCGGSNSE REHSFDTQSV 
YDLITSYLGT AQSQEQLYAG RAKRLLENPA VLENFERVFE RHLKAGLAAK LMEEDEGELE 
QSGPQSSLAA PSQLPQSLLR SRFFTYKAGS KHHTPRQSLR KPRKVQHHVS LHRINAVNEA 
ASSVTAPVAQ ATKGHPATCH CQKHTAPIVP PQLWPQGQLL MRPTPGSGVR IRGIRFAKAT 
SSSYLWQASD YPSGQSPVTW PQALQDHWKE ANVHISATAM PEGHDELLQR LQSYRMCPNC 
MILPVNNGNE PDGESLVTDF ESDLFVGTML VRLRHTQGTT PEPYNDQIGY FANVKRRYQV 
VMRGRFKQSI PWTRCVAGLE LTRKTARLPA KCVVKGAMKV ISFLAPQLDA QLEGSHPHSL 
TPLGSTAQSL RVQRNTPSSI ENNYDEFDLE AKLEEPTRDE ETLLGKASTA SSTTSRARFR 
KKGFDKVFGS KEASLQTNPE DIYTFEFLQH LFNFQEFSIE LSSLFGSIHL QDCLDGQPLQ 
IVAKHKDSNN TRLWSFDVWH ECLYREAVAF DERNCD