| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_49881 |
|---|
| Symbol | |
|---|
| ID | 7198512 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011693 |
|---|
| Strand | + |
|---|
| Start bp | 177828 |
|---|
| End bp | 179644 |
|---|
| Gene Length | 1817 bp |
|---|
| Protein Length | 423 aa |
|---|
| Translation table | |
|---|
| GC content | 52% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002184666 |
|---|
| Protein GI | 219128956 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | CACGTGCTTT GGAGAAAAGG TAACAGTTAC CAACAAGCTG GCGCATCTTC TTTCGACGAC
AAAGCACATC GCCGGTGTCC AACTTGGCTC ACAGTCAGCT CACAAAGTCT TGCAAAGCGT
CCTTAAGTTA CCAAGAAGAA TTCATATAAA ACCTACCATC GAACAGGCTC CTCACAATCA
TGAGACTTGC TGTTGTTAGT GCCACCGGTA CGCTCGGTTT CTGCCGCTTG TTCCTCGGGA
TCCTGCAAGC CGCAATCTTG GCTTCGTTGA CGTTCGCACA CGCCGACGAC ATTGGCGACA
ATTCAATCTT TCAGTCCACA ATGCTGGAGG CGCAATTGCC GAAACCCCTC TCGGACATGA
CGGCCACGTA CTTGGGTAGC AGTGACGATG GGGTGTACAT TGCCGGCGGC TGCGACGATC
CGAACGGCAA CGTCTTTGTG GATGATCCAG ACTTTCCCGG ATTCTCGTGC GGTTCCATTT
CCGATACGCT CTACCGCTTC GACGTGTCGG AGAGCACCAT TCGTGAAGTT GCAAAAATGC
CACGACCGCG ATACCGTCAC GCCGCCTTTG GAATCCAAGG CCGACTGTGG TTGGTTGGTG
GACGGGATTT GAATGATGAC ATCGTGGTGG AAGTCGATGT GAGTACAGCT ACTGTGCGTG
GTAGAACCTT GCTATTCATA CCGTCATGGC TTCCCTCCGT GCTCGTGGCG CAGATTTGTG
ATTGCTGTCT TGCGTTGATT CTTTTTTTTA CCTACGTCTC GCTTTCTCAC CCGTATACTG
GTTGCCGTTG TTACTTGCTG ACTGTCCTTG GTGTTGCTCG ATCCAGTCGT ACGATACCGC
TACTGATACT TGGACGACAT TTACGGATCT TCCCGTCTCG CTCGCTACGA GTGATGTGGG
AGGTTTCAGC CACGGCGACT ATGGCTACAT CGTCGGTGGA TATAGTCAGG ATTACAAGGC
ACAGGCCACG ACCTGGCGGC TCTTGACCAC CGCCGCACTC GTCAATAACT CCTTGGCGAA
CGACGATGCG GTCGAAATCG TCAATGGCCT GGCGGAAGCT CGTGGAGACG TGGCCGCGGC
CTTTGACAAC AACTTTGGCT ACGTTTCGGG TGGCTTCACG GACGTGAACA AGTTTTGCGA
GCCGCTCGCT TCCGTGTCGG CCTACAGCTT TGACTCCGGA GAATGGAGTA GCCTGCCCGA
TTTGGCCTTT GCCCGGGGCG ACAAGGGACT GGCAGCGTTT GACGGACACA TCTACGCCCT
AGGTGGAGAA CGACAAATTG AAAACATTTG TGCGGTGACC GCCGATACAC CCGATCCGGG
GGATTTGACC GTGGCGGTGG ACGTAGCGGA ACGTTTCGAT CTGGGTGAAG GGAACACCGA
ATGGACCTTA TTGGACGATT TGCCCATTCA TCGATTCCGA TTTGCTGCCG TAGCAGTTCC
TGCTCGACAC GAAGTTCTCA CGTTCGGTGG TCAACAGGCG TACAATGCGG ACTGTCAGTG
TTTGGCTGCA ACGACGGATA TCGTTCAGTA CAAGGAAGTT CCCCAGGAAA GCGGAACTTC
GGATGCTGGA CATGGTTACT GGCTGCTGCC GATGAAAATG ATTGTGTTTG CGATTACGTA
TATGACATTG ATTGCGTAGT AGAATTCTCG TTTGTTTGGA ATGTTACTGG CCATACCGAG
AAAGTTTCTT ATATGTGAAA CGACACAAAC AGCGCTATCG GTATGTACTC GCAAACAAGA
CAATTTTTGT TAGTTGATTG GGGGCTAGCT CACTGTCAGT TTGAAGCCAT TTTAAGAGTA
CAAAGCATTT GACTGTA
|
|---|
| Protein sequence | MRLAVVSATG TLGFCRLFLG ILQAAILASL TFAHADDIGD NSIFQSTMLE AQLPKPLSDM
TATYLGSSDD GVYIAGGCDD PNGNVFVDDP DFPGFSCGSI SDTLYRFDVS ESTIREVAKM
PRPRYRHAAF GIQGRLWLVG GRDLNDDIVV EVDSYDTATD TWTTFTDLPV SLATSDVGGF
SHGDYGYIVG GYSQDYKAQA TTWRLLTTAA LVNNSLANDD AVEIVNGLAE ARGDVAAAFD
NNFGYVSGGF TDVNKFCEPL ASVSAYSFDS GEWSSLPDLA FARGDKGLAA FDGHIYALGG
ERQIENICAV TADTPDPGDL TVAVDVAERF DLGEGNTEWT LLDDLPIHRF RFAAVAVPAR
HEVLTFGGQQ AYNADCQCLA ATTDIVQYKE VPQESGTSDA GHGYWLLPMK MIVFAITYMT
LIA
|
|---|
| |