Gene PHATRDRAFT_49872 details

Gene Information

• Locus tag: PHATRDRAFT_49872
• ID: 7198504
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011693
• Strand: -
• Start bp: 144544
• End bp: 146661
• Gene Length: 2118 bp
• Protein Length: 545 aa
• GC content: 58%
• Product: predicted protein
• Protein accession: XP_002184742
• Protein GI: 219129115

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

CCGGAAACAG GCATTCCACC ATCGCGCGCC TCTGTCCAGT GCACAGCCCA CTCGACTAGG 
GGAAAAAACC CGACATCCCA AACCCCCCAT TGCAAACCCA ACAGACGACA CCTACGCTTC 
CCAAATTGTA TATATTTGTT GCTTGGGTGG CGTGTACGAA TCTTGAATCT TCGAGGCGTG 
CCACAACGGC ACCCGAACGT GTGGACTTTT GGTCACAGAT ACTGGAGACG TTGTTGTTGG 
TGAACGACAG TGTGCGACAA AAAGGCGTAC GATTTTCCCC ACTCTGACCG ATCGTTTCGT 
GGCCAAGTGG AAATCACTGT CTGCTGTGTT TGGCCCCAGT CCATTGGGTG TGCGTACTGC 
AACGACGACG ACGTATTTAC GGATTCGATT CATTTCGAAT TGGTGATTCG AGGCAAAGCC 
AAAGTTCGGA ACGAATACGA AGATCAATGT CCGGAATGCG CTCGACTCGA CGGTACAATT 
CCCGGCAGTC GTCGTCCTCA CCGCGTGGAG TCCTTTGGTT CGGCAGTAGC ACCATTCCCG 
TGGCGGTTGT ACTGACTCTG GTGGGGATCG TGATTCTCCC GGCGTTCCAG CACCCGCACG 
GGTGCTGCAC GGTCGACGCC TTTGCCTCGT ATCTCTTGTC CACGACTGGA TGTAGGACGG 
ATTTGGATAC TACCGAAGTC ATTATGAATC AGCTGGTAGT CGCGGCGGGT GAGGAAGAAA 
CCGCCAATAA TGAGGTCGTC GATGGGGAGG AACCGATTCC TTCCTTCCAC GTCGTCGTTG 
CGGACCACAC GGTAGCCGCC GACGGGAGCC TCACCATAGC CACCCCAGTG TCCTCGTCGC 
ACCATCCAAT CCTGCTGTCC CTACAAATTG TACCGACACC ACCGTTGTCA CCACAATCCA 
CACACGTCAA GGACTACCAG TTCGTCGTCC AAACAACCGA AGGCTGTCGT TTCGTCCACG 
GCGGTTGTGA CGACGAACGT CGCATCGCGG GACGGGGATC CGAGACGGTA CAGCTCGCGA 
TTCCTCCGCC GACGACGGAA TCGGTGCGGG GAGCAGACGT GTGTACCGTG TGGGGTGGCT 
GGGCGGCCGG ACACCACGCG GTACGATTGA CTCCAGCCGT CGTGATACGA CTACATGCGA 
ACGAACACAA CCATCCGGGG GATGCGCACG TGGCGGAACC GACGTGGTTC GAGGTTGGGA 
CGGAACAAGG TTGTACGGAT GGTGGTACAC TCGTCGACGC CGTGGGGATG GGATCGCGAC 
TCGTCGTGGA GGACACGGAC GATCGGTACG GGAAACTCGG GGTGAAAACG GAGGTGGACG 
CTGTACCGGC GGAACTGTCT CTGTACTGGT CACCGCGGCC CGGTGGGGAC GCCTCGGTCA 
ACGAGTCGAC CATCGACACG TTGGTGCTGG AGACCAGTCC GGGAGCCACG TTTACGGACG 
GAGCGTGTGG AGGGAAACGG ACCGTCATCA CCAAGGAAAT GCTGTCCAAC ACCGCAGCCT 
GGCCGCAACT GACGATACAC ACCGAGCGAA CCGTTTCGGT GTACGGGGTG TATGCACTCA 
CCGGACCCGA CCACGTGGAC AAACTCTACC GTATGGACAC ACTGACTCTG GAATGGAGTC 
CGCCGTCGAC TGACTACCGA GCGCGTAAAG AAGCCGGGGA GAAATCACGC AATCGCCGGA 
ATTCGTCACG GAACACACAC CGATCGCCCA AGTTGCCCCG TGGTACACCG GTGGATCCGC 
AAAGAGCCAT TGACGCGGCC GCCCGCCGGG ACGCCTCCGA CATTCAAGCA CAGGTGGCAC 
GACACAACGC GGGGCATCGG AAAGAAGAAG GCGTTCACCC GGGAGAAGGG AAATCCCGCG 
AGGGCAGACG TCGTTTTTCG CGACGGATGA CTGGAGAAGC CTTGCGTCGG GAACCGCAAC 
TCTCTAGGCC CTACCCTCCC AGGAATCTTC GCCACCGACC GTTCCCGGTC GTGGAGGGAA 
CGGAGTATTG CCTGGCCATG GCCTTCTTCG TTGCCGCGCA CGTATTTGTC ATACAATTCT 
GTCTCATTTG TAGTCAAAGA CCTAAAGGGC GGAGAGTATT GTAGTTTAAC TGTAAGTTGT 
GACTTTTAGT ATAGCGTT 

 

Protein sequence

MSGMRSTRRY NSRQSSSSPR GVLWFGSSTI PVAVVLTLVG IVILPAFQHP HGCCTVDAFA 
SYLLSTTGCR TDLDTTEVIM NQLVVAAGEE ETANNEVVDG EEPIPSFHVV VADHTVAADG 
SLTIATPVSS SHHPILLSLQ IVPTPPLSPQ STHVKDYQFV VQTTEGCRFV HGGCDDERRI 
AGRGSETVQL AIPPPTTESV RGADVCTVWG GWAAGHHAVR LTPAVVIRLH ANEHNHPGDA 
HVAEPTWFEV GTEQGCTDGG TLVDAVGMGS RLVVEDTDDR YGKLGVKTEV DAVPAELSLY 
WSPRPGGDAS VNESTIDTLV LETSPGATFT DGACGGKRTV ITKEMLSNTA AWPQLTIHTE 
RTVSVYGVYA LTGPDHVDKL YRMDTLTLEW SPPSTDYRAR KEAGEKSRNR RNSSRNTHRS 
PKLPRGTPVD PQRAIDAAAR RDASDIQAQV ARHNAGHRKE EGVHPGEGKS REGRRRFSRR 
MTGEALRREP QLSRPYPPRN LRHRPFPVVE GTEYCLAMAF FVAAHVFVIQ FCLICSQRPK 
GRRVL