| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_49838 |
|---|
| Symbol | |
|---|
| ID | 7198664 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011693 |
|---|
| Strand | - |
|---|
| Start bp | 41944 |
|---|
| End bp | 43883 |
|---|
| Gene Length | 1940 bp |
|---|
| Protein Length | 557 aa |
|---|
| Translation table | |
|---|
| GC content | 50% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002184720 |
|---|
| Protein GI | 219129068 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCTCGAG GAAATTCTCG CAAGAAGATG CCTGTCGCTG CAACGACGAC GACGACACAA
AGAAAGTGAC AAGAGAAGAA GAGCCTGAAG TAAAGTCAGA AGAGAACCGA CAGACCCCTT
GGACAAACAC CTCTTCCAGC GAGAACACCA AAAGTAAATC CGTAAAGACG CCTCCGCCTT
TATTGAACGA AAACTCTCCC CAAGAAAGCA AGTTAAATGC CAACGCCCCC CAAGAAGCTG
AGCCCGAGCC AAAAATCGCT CGTAAAGGTC AAGAGCATCT CGGCCGTTGG ACTGAGCCAG
AACATGATCG CTTTTTAGAA GGTCTCGCAA AACATGGACG TGAATGGAAG AAGGTGGCTG
CTTCCGTGCA GACTCGAACC GTCATGCAAG TGCGGACTCA CGCTCAGAAG TACTTTGCTT
TGCTGAATGC AGGCCAGACT ATGAACAAGT TTGCTACCAC AACACCACCT ACCCGCCAAG
AAGCCGCCAT CAAAGCAGAT CAGAAAGAAA AGGCCCTGAA AACTAAGATG GGCAAGGCTA
AGACTTTGGA CGGTGCCGCG GTGGCCAGAT CCGAACCTGC GGTAGCCGTT CCCAATTTGG
CGACCGCTTC TCAACCTTCG GTGTCGCAAC CCCATCCGAA CTTGCCTGGA TTGGGTAATC
CTGGATTGCC CAACGTCCAC AACTTGCTAG CCATTCAACA ACAGAAGCTG ATGTACCAAC
ATCGGGTCAT GGCTCATCAG AACGCCATGT TGCAGCAAAA GACCATACAC ACGATTCCCA
GTCGCGTGAT CGATGCGCCT GTACAGACGG CTCCTAACAC CACCGTGGCA AAGGCACCGT
CTGGTCCGCT TTTGCAGGGG AACGACATTG TCATTTTCCC CGACACATCT GTCAACCCTG
CATCTCATCG GCCCTCTAAC CAAGAATACG AAGACTTGCT ACTCATCAAT TGCTTTTACT
GGCACTCGTT ACCAGCCGGA TTTCAGTGGC CATACGTTCA GCGGTTGTAC ACCCTACTCA
AGTTGCGAGG ATTACGTATG GTTACTTTGT GGCAGGACGG AAGCGTTCAC GACTTTGTGC
ACGGTCCTTG GCAAATTGCC AAAGAAATGC GTGACGAGAC GTTCAAGCAG AAAGCTTTGG
CAAAGTATGG CTCGATGCAC GTAACGGGAA AAACGGTGGG ACTCTGCGTC GCCTACAAGG
ACAACGAGTG GAATGTGCTT GACGTTGAAA AGTATGCAAA ATGGGATTCC AATCTCGTAT
CCGGTGGTGG TTTGGTGCGT CTTCCTCAGG GTGTGACACT CGCTCCGGTC CACTACCAAA
CCGATGCCAC GTCGGAAGTC ACGGACAAGT CGACTCCACA AATGACCCCA CCACGAAAGT
CAAAGACTCC TCGACAAAAC GAGTCACTTC AACAGGTGCA CAAGGAATTT TCTAAGCGAT
CCTCTTCTTC AGCCAGTCTC GATACGGCTC CGGTGAACGC AAAGAAAGAC ACTAAACAAA
AGACTGAAAA AAATACTTCC GCTGCGAAAA AGTCTGCCGC CGCCAAAGTT AAGGTGGAGA
AGGAAAGTGA CAAGTCTCTC CTGAAGAAAG CGAAGAAAAG CAGAACTAGT GTTTCGTTCC
CGTTGAGATC CCAAGCTAAA GAGGCTAAAC CACGAAAGTC GATGTCGGCT TTGAAGAAAC
GGTCAGAATC TCCGACGGCA ACAGATCCAC CGCGCTCGGC CCGCCGTTCC AAGCGACAGC
GTTTGTAAGT GGGGAAAGGG CGGCTTTTCG CCTTGACCGT TCTAATGTGA TATGTTTGTG
ATGGGACCCT TTTGGGAAAT TGGCGGAGTG ATCTGAGCAA ACCAAAAGTT GCGGGGAAGG
GAATATACTA CGTGGTCAGT TCTGTATACG CAACGGGAGA ACGTAAAGAA AAGAATATAA
ATATGAAATG TGGGGTGTTG
|
|---|
| Protein sequence | MPRGNSRKKM PVAATTTTTQ RNENTKSKSV KTPPPLLNEN SPQESKLNAN APQEAEPEPK
IARKGQEHLG RWTEPEHDRF LEGLAKHGRE WKKVAASVQT RTVMQVRTHA QKYFALLNAG
QTMNKFATTT PPTRQEAAIK ADQKEKALKT KMGKAKTLDG AAVARSEPAV AVPNLATASQ
PSVSQPHPNL PGLGNPGLPN VHNLLAIQQQ KLMYQHRVMA HQNAMLQQKT IHTIPSRVID
APVQTAPNTT VAKAPSGPLL QGNDIVIFPD TSVNPASHRP SNQEYEDLLL INCFYWHSLP
AGFQWPYVQR LYTLLKLRGL RMVTLWQDGS VHDFVHGPWQ IAKEMRDETF KQKALAKYGS
MHVTGKTVGL CVAYKDNEWN VLDVEKYAKW DSNLVSGGGL VRLPQGVTLA PVHYQTDATS
EVTDKSTPQM TPPRKSKTPR QNESLQQVHK EFSKRSSSSA SLDTAPVNAK KDTKQKTEKN
TSAAKKSAAA KVKVEKESDK SLLKKAKKSR TSVSFPLRSQ AKEAKPRKSM SALKKRSESP
TATDPPRSAR RSKRQRL
|
|---|
| |