Gene PHATRDRAFT_16302 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPHATRDRAFT_16302 
SymbolLhcf12 
ID7198611 
TypeCDS 
Is gene splicedYes 
Is pseudo geneNo 
Organism namePhaeodactylum tricornutum CCAP 1055/1 
KingdomEukaryota 
Replicon accessionNC_011693 
Strand- 
Start bp273174 
End bp273874 
Gene Length701 bp 
Protein Length193 aa 
Translation table 
GC content52% 
IMG OID 
Productprotein fucoxanthin chlorophyll protein 
Protein accessionXP_002184765 
Protein GI219129163 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCCCATG GTGGTTCCCA TAAGCTCTCC AATACCGCAT TGCGTGTCAC AGGATTTGAA 
GACGAACTCG GAGTCCAAAA GCCGCTGGGA TTCTGGTAAG GAGTATCGTC ATTTCCCCCC 
GCATGCCTCT CTAACATATC TTACCACACT GCACGACTTT ACTCACTGCG CGAAATCCGT 
ACACTCACGG CTGTTTACTA TTTCATCCTC GTAGGGACCC GTTGAGTGTG TGTGATGGTG 
CCGACCAAGC CCGTTTTGAT GAACTTCGCT ACGTCGAAAT CAAACACGGC CGAGTCGCCA 
TGTTGGCGAT TGTTGGACAC ATGGTCACGA GCGCTGGAGT TCGTTGGCCG GGATCGATCG 
GCGGCGTTTC GTACTCGAAC ATTCCCGCCG GGTTGGCCGC TTTTGAACGC CTACCTATAT 
CGGGTCTCGC AGCCATTTTC GTCGCGATCG GATTTTTGGA GGTCGTCGTT ATGAAAGACA 
GCAAGGGCGT TGCGCAATAT CCCGGGGACT TGCGGAACGG TTTGTTTCAG TGGAGCGCAA 
CTCCGGAGGA GCAGTTGGAG AAACGAGCGA TCGAGTTGAA TAACGGCCGA GCCGCACAAA 
TGGGCATTTT GGCTTTAATG GTGCACGAAA AATTGAACAA CGAACCCTAC ATGATCAACT 
CGTTTCTGGG ATATTCCAGC CACTTCAACG AGAACTTTTG A
 
Protein sequence
MAHGGSHKLS NTALRVTGFE DELGVQKPLG FWDPLSVCDG ADQARFDELR YVEIKHGRVA 
MLAIVGHMVT SAGVRWPGSI GGVSYSNIPA GLAAFERLPI SGLAAIFVAI GFLEVVVMKD 
SKGVAQYPGD LRNGLFQWSA TPEEQLEKRA IELNNGRAAQ MGILALMVHE KLNNEPYMIN 
SFLGYSSHFN ENF