Gene PHATRDRAFT_30648 details

Gene Information

• Locus tag: PHATRDRAFT_30648
• Symbol: Lhcf5
• ID: 7198479
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011692
• Strand: -
• Start bp: 469567
• End bp: 470288
• Gene Length: 722 bp
• Protein Length: 197 aa
• GC content: 53%
• Product: protein fucoxanthin chlorophyll a/c protein
• Protein accession: XP_002184620
• Protein GI: 219128858

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 0.765371
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

CAGACTTACT TCTCACAAAT TTTTGTTGAA AACTATTCAA GATGAAGTTC GCCGTTTTCG 
CCTCCCTACT TGCCTCCGCC GCCGCCTTCG CTCCGGCCCA GCAGTCCGCC CGTACCTCGG 
TCGCCACCAA CATGGCCTTC GAGAACGAGC TCGGTGCCCA GCCTCCGCTT GGATTTTTCG 
ATCCCCTCGG CCTCGTCGCC GACGGTGACC AGGAAAAGTT CGACCGTCTT CGTTACGTTG 
AGATCAAGCA CGGACGTATT TCCATGCTTG CCGTTGCTGG ATACCTCGTC CAGGAGAACG 
GAATCCGACT TCCGGGAGAC ATCGACTACT CCGGAACCAG CTTCGAATCG ATCCCTAATG 
GTTTCGCCGC TTTGACCACC ATCTCCGGTG CTGGTATTGC CCAGATCGTT GCTTTCATTG 
GATTCCTCGA GCTCGCCGTC ATGAAGGATA TCACTGGAGG AGAATTCGTA GGTGACTTCC 
GTAATGACTT TATTGATTTC GGCTGGGACT CCTTTGATGA GGAAACCAAG ATGCAGAAGC 
GTGCTATTGA GCTCAACCAG GGCCGCGCCG CTCAGATGGG TATCCTTGCC TTGATGGTCC 
ACGAACAGCT AGGGGTCTCC CTCATCCCCA ACTAAGCTAT GGGTTGATGT TCCTCCGGTT 
AGATCTAACA GGATTAGTGC AATTCGAGTT GAATCACTGG GAAAAACATT GTCTTCTTTT 
TT 

 

Protein sequence

MKFAVFASLL ASAAAFAPAQ QSARTSVATN MAFENELGAQ PPLGFFDPLG LVADGDQEKF 
DRLRYVEIKH GRISMLAVAG YLVQENGIRL PGDIDYSGTS FESIPNGFAA LTTISGAGIA 
QIVAFIGFLE LAVMKDITGG EFVGDFRNDF IDFGWDSFDE ETKMQKRAIE LNQGRAAQMG 
ILALMVHEQL GVSLIPN