Gene PHATRDRAFT_49562 details

Gene Information

• Locus tag: PHATRDRAFT_49562
• ID: 7198228
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011691
• Strand: +
• Start bp: 47901
• End bp: 51461
• Gene Length: 3561 bp
• Protein Length: 1186 aa
• GC content: 52%
• Product: predicted protein
• Protein accession: XP_002184292
• Protein GI: 219128171

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 0.585326
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTACGCCC AAGCAGATAC GGTTGTCGAA AAAGCCATTC GCGACGGCTC ACCTATGATG 
AAACGATCGA AGACGACAAG CATGACACCC ATTCCCCACG AAGAAGACCC CTCGAATTCT 
TCGTTGAAAG ATACAGTAGC GGGAGACTCA GATGCGGAAG AACCTGAAAA GGTGAAGATG 
TTTCTGGGGA GTTTTGACGA CCTCAACAAA AAGCCTCGCC GCTCATCGCC AGGTGGGGAA 
AACGTTTGTA TGTACGATGA AGACGAAGAT CTAGATAAGG CATCGATGCA TTCGACGCGG 
TCTTTTCGTA GAGCCTCAAT GGGTGGACTT CCAAGTGAAA AAACGTACAT CCGACGGAGT 
CTCGTTTCGA ACGATGATGA CGAACGATCA ATACACTCTG CGCGATCGTC CCGTTCCCGG 
CGCGCCTCGC TGAACGGTCC CATTCCTGCA AGCATGCTAG GAGGCCTCGG TCCAAGTGAT 
GGTTACGGTA CAGACGACGA TGATGATGAT ATAGGAGTAT CGCAGCACTC ATTGCGACGC 
CGTGCGTCCA TGAGTCGTCG AGGCTCGGCG GGATTCGGAG CCCTCCCGCC GGGGCGTGTG 
CACGACGATC CCTGCGGTCC TCCCCAACCG GTGAAACGTC GCACTTCAGC GGGGAACAAC 
CCGCGTCGTG TATCTCCAAA CTATAATGCA GAGAAATTGG AAGGTGCAGG AACCAATGCG 
TCCCGTCGCA GGTCGGGGGG GTTTGGTACG GAGCATCGTG GATCGACTGG TTTCGAGACC 
GGAGGTACTC CCCTTGAATA CGCTACCCGG CGGGCTTCGG CCGGAAGTAT AAACAATAGT 
AGGTACGAAA GTGTAGATAC AGAAGCAGGT CCGGTGAACC TTCAAGGGCG TCGGGGCTAC 
GTTGGAAGTT CGAGTCGCCG GGGCCCAATC AGTAACGGTC CATCGGAGAC GGCAACACGC 
ATGGGGTCCA CGGCAGGTGG ACTTCTTCAT CAAGGAGGGC ATCGGGGACA CGATGGGAAC 
ACAAGTCGGC GAGGCCCCAT CAGCGGCGTA CCACAAGAGC ACCTTATGGC CACTCAACGT 
AAAATCTTTG CCCGTACGCC AGTCACGCGC AATGACACCA CCAACAGTGT TGAACTAGCA 
AGGGGTCGAC GTGCATCAGC CGAGCTTGAT CGCAACGCCT TTGCTCGGGG AGCACCTCCC 
CGAACAACTA CCGCAGACAG CATGGAATTG GCTCCCGGGC GGCGAGCCCT GACCACATCG 
TCCGAAAAGA GTCAATTTGT TAGAGGATTG CCCGCCCGAT CCACGACGGC CGACAGTATG 
GAGCTTGCTC CAGGACGTCG AACAGTGAGG GTGTCCCCAG ACCACGTGGG TTTCTCGGAA 
GAACCTATGC TGTGCAGCCA AGCTACTGAT AGTATCGAAC TTACTCCAGG TGGACGGGCT 
TCTCTCGCTA TGGACAAGTC CGTCCGCATC CCGGTGATGC GGACCAACAC TGCCAACAGT 
ATGGATCTCA TTCCTGGACG CAGGGGGGTG AAGGATTCGC TGACAGAGGA AACGGAGATG 
ATGTATGAAC AGGTCAATAC TGATCGTCAG ATGCCGCCGA GTCGTAGTGC GGCTCTACGC 
CGTGGACGGA GAGTATCGTC CGGCTTCAAT GAGTCCGCTT TGGATCGTAT GAACCAGGCT 
GCTTCTTGTG ATAATCACAA TGAGGAATCG GAAGAATCAG AGCCCGATTA TGGCTACGGA 
GACGGGATGG CTCATCCATA CGGATATTCA GCAGATAATT ACCTATCCCG GAGGGAAAGT 
ACTGCCTCCC AAGTCTCCAG CAACGCAGTC ATGAGCCGTC GAGGCAGCAA CTATTCTCAA 
TCTAGCGGTA TTGTCAGCCG TCGCGGAAGC AATTATTCCC AGTTGTCGGC ACAGCGCACC 
CGACGTCGCA ACAGCTATTT GGTGCGCCCA GAACGAGATT TCAATATGGC GGACGAATTG 
TTGGATAGCG CTTTACGCAT GTCGGATAGC GACCTTTCCG AAGACGAGCA CAAAACTTTT 
TCCAAAGATG TTCCTAAAGC CTTCTACAAC TACAATGGAG AGCAGTCATT GAACACACAA 
AGTGCATTTG GATATGATTC CGACGCCCAG TCCATGTCCA GTGCTGACTC GCAAAATTCA 
TCCAAATCCT ACTGCCGCAA CAGCTACTTG GTCCGGCCCG AGCAAGATGC GGCTTTTGCA 
AGTTCGCTCT TGGCAGCGAC GCCACGGATG TGTGAAAGGT TAGTCGCTAC TGAGCATGCA 
TCAATTGAGG AGCATCTAAC CGAAGATGAT CAATCCGAAG AAGAAGAAGA AGATTTCAAA 
AATCCGGACT CCCTTCTCAG TCGCAGTGGT TACCTTAAGG TACACGGAAC GCAACACCAT 
TCACACTTGC TGGAAGCGGC CGTTGAGGTA GAACTAAAGG AGTTGAAAGA CGGAGAGCAC 
GAGAATGACC AGCCTATGAG GTCTGTCCCT ATCGCGGCTG GACAAACCTC GGGAACGCTC 
GTCGGAGCGC GACTCCAGCC TACTAACGAA CAAGTAAAGC ATCAACCACA GAACGAATCC 
AAGGAAAAGG ATGCTTGGAA TCGTCGCACT CCCTTTACCA CTTCTCTTGC TGAGTCTTTG 
ACTGCGGATA AGATTAACGA ACTTCAGAAG ATTCAACCCA AGATCTCTAC GGAGAATATA 
CCAAAGCAGT ACATGCGCTC TTGCAAAATG AATTGGGGAG AACTCACCCT CGAGAGTAGC 
GATGAGTCAT CAGAAAATTA CTCCGAGTCT AGATTTGGCT CTAGATTGTA CGAAGATTCT 
CCCTCAAATC AAGAACTAGA CGGCTACAAA CAGCGAGCGC GTCGTCGTGA ATCAATCGAA 
CGAACCGTTT TAAATATTGA AAAGTCCGCT TCCTCCTCTC TCCTGCATGG CAAGAACACT 
CCAGATTTCA AGCCTGCAAC TGGCTGTGTA AACGCTTCCG ACTTCATTGT CCGTTGCTTC 
TCTGCTCGCC TCCGAATGGG GATCACAGTG CTCAAGCACA ACCGATCTCG CTGGAGTAAG 
TCGTCTAATC GTGATTTGGT ACTCCTTGAT GGTCGTACAC TTAGCTGGAA ACCTGTCGGC 
GGAGAGCAGG ACAAAGGAAA GCGTCCTCGA TTAGATATTT CCAAGTGCAG GGAGGTTCGT 
CATGCCTGGA GTCGGGATCC ATTGACACGA AAGCAGACTG GTACGATTAC TCTACGGAAG 
CGTTGTAAAG ACGGCATGGC GAGCAAGTCG TTCTCTCTTA TATTTGGAAA ACGCACTTTA 
GATATCACAG CCATGACAAA CGACCAATGT AAGGTTTTGA TGGAAGGCTT TTCGGCCCTT 
TGCTACCGAT TGCAATTAGA ACAGCTGGAA GAAGGCGACA CTCACTCGGA ATCGCGTGCT 
GCCCGTGGGG GCGATTCCAA GTCCATGACA ACAGACGACG ACTGGAACTC TACTGTATTT 
GGTGACTCAA CCATGAGCTT GACGCAAAGC AACACAACCG GTCGGACTCT TCCAATACCA 
GCGTCGCCAT GGGGGCTATG A 

 

Protein sequence

MYAQADTVVE KAIRDGSPMM KRSKTTSMTP IPHEEDPSNS SLKDTVAGDS DAEEPEKVKM 
FLGSFDDLNK KPRRSSPGGE NVCMYDEDED LDKASMHSTR SFRRASMGGL PSEKTYIRRS 
LVSNDDDERS IHSARSSRSR RASLNGPIPA SMLGGLGPSD GYGTDDDDDD IGVSQHSLRR 
RASMSRRGSA GFGALPPGRV HDDPCGPPQP VKRRTSAGNN PRRVSPNYNA EKLEGAGTNA 
SRRRSGGFGT EHRGSTGFET GGTPLEYATR RASAGSINNS RYESVDTEAG PVNLQGRRGY 
VGSSSRRGPI SNGPSETATR MGSTAGGLLH QGGHRGHDGN TSRRGPISGV PQEHLMATQR 
KIFARTPVTR NDTTNSVELA RGRRASAELD RNAFARGAPP RTTTADSMEL APGRRALTTS 
SEKSQFVRGL PARSTTADSM ELAPGRRTVR VSPDHVGFSE EPMLCSQATD SIELTPGGRA 
SLAMDKSVRI PVMRTNTANS MDLIPGRRGV KDSLTEETEM MYEQVNTDRQ MPPSRSAALR 
RGRRVSSGFN ESALDRMNQA ASCDNHNEES EESEPDYGYG DGMAHPYGYS ADNYLSRRES 
TASQVSSNAV MSRRGSNYSQ SSGIVSRRGS NYSQLSAQRT RRRNSYLVRP ERDFNMADEL 
LDSALRMSDS DLSEDEHKTF SKDVPKAFYN YNGEQSLNTQ SAFGYDSDAQ SMSSADSQNS 
SKSYCRNSYL VRPEQDAAFA SSLLAATPRM CERLVATEHA SIEEHLTEDD QSEEEEEDFK 
NPDSLLSRSG YLKVHGTQHH SHLLEAAVEV ELKELKDGEH ENDQPMRSVP IAAGQTSGTL 
VGARLQPTNE QVKHQPQNES KEKDAWNRRT PFTTSLAESL TADKINELQK IQPKISTENI 
PKQYMRSCKM NWGELTLESS DESSENYSES RFGSRLYEDS PSNQELDGYK QRARRRESIE 
RTVLNIEKSA SSSLLHGKNT PDFKPATGCV NASDFIVRCF SARLRMGITV LKHNRSRWSK 
SSNRDLVLLD GRTLSWKPVG GEQDKGKRPR LDISKCREVR HAWSRDPLTR KQTGTITLRK 
RCKDGMASKS FSLIFGKRTL DITAMTNDQC KVLMEGFSAL CYRLQLEQLE EGDTHSESRA 
ARGGDSKSMT TDDDWNSTVF GDSTMSLTQS NTTGRTLPIP ASPWGL