Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PHATRDRAFT_23399 |
Symbol | METH |
ID | 7198319 |
Type | CDS |
Is gene spliced | Yes |
Is pseudo gene | No |
Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
Kingdom | Eukaryota |
Replicon accession | NC_011691 |
Strand | - |
Start bp | 421969 |
End bp | 428366 |
Gene Length | 6398 bp |
Protein Length | 1245 aa |
Translation table | |
GC content | 56% |
IMG OID | |
Product | methionine synthase |
Protein accession | XP_002184461 |
Protein GI | 219128523 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TCTACCCCCG GGTCGAGTTT GACTACGACA AGATTCCCCC CAAGCCTGCA ACGGAACCGC CCCTGCCGAC TTCCGCCGCC GCTCGCAATC ACGTGCCCAA TCCCTACGTC AATACGACTC TCACGCACGA CCGGATCCAA GAAATCCGTA ATCGCAGTAC CCTGACCCCC GCGCAGCGGA ACGACATTGA CTACCCACAA CCGGTGGACC TGTACCCCAC GGACTTTCCG TACTATGTGC GGGGTCGCGA CAGTCTGCGG ACCTACATCA CGAAGCTGTT TACGTCGCAG ATTGCCATTT ACGACGGGGC CATGGGCACC ATGATCCAGA ACTACGCCAA GAAGAACCGA CTAGACGAGG AAGAGTACCG GGGCGAGCGA TTCCGCGACT GGAACTGCGC CGTCAAGGGC AACAACGACA TGCTCAGCAT CTCGCAGCCC CACATCATCA AGGGTATCTA CATGCAGTAC CTGGAAGAGG GCGGCAGCAA CATGATTGGG ACCAACACGT TTTCCTCCAC CACCATTGCT ATGGCGGACT ACCAGATGGA AGCGTACGCG TACGAGCTGA ACTACGTGGG CGCTCGGTTG GCGCGGGAGG CCTGCGATGA AGTGACGGCC AAAGACCCTA GTAAGCCGCG TTTCGTGGTG GGAGCCATTG GACCCACGAA TCGTACGTGT TCGATCTCGC CGTCGGTGGA GGACCCCGCG GCACGCAACG TGACGTTTGA CGAGCTGGTA GAGACGTACC TGGAGCAGGT GGTGGGTCTG GTGGACGGCG GTGCCGACGT GCTCATGGTG GAGACCATCT TCGACACGTT GAACGCCAAG GCGGCGTTGT ACGCGATCGG AGAGTTTCTG GAGTTTAGCG GGTTGGACAT TCCCGTGTTT GTGAGCGGCA CACTGGTGGA CCAGTCGGGT CGTACACTGT CGGGACAGAC GGGCGAGGCC TTTTACGTTT CGATCCGGCA CGCCAAGCCG ATGTGTGTGG GCTTGAACTG TGCGTTGGGC GCCAAGCACA TGGTACCCTT TGTGGAGCGC TTGAGCAAGG CGGCCGAGTG TTTTGTGCAC GTGTACTCGA ACGCGGGTCT GCCCAACGCC ATGGGCGGGT ACGACGACAC GCCGGAAGAC ATGGCGCGCG AGAACGAGGT GTTTTTCGAG AACGGCTGGT TGAACATGGT CGGAGGGTGC TGCGGGTCCA CGCCGCCGCA CATCAAGGCC ATCCGCGAGA CGGCAGAGCG GTACCAGCCC CGCAAGCTGC CGGATGTGGG CCGGCCCAAG ATGTGGCTGT CGGGGCTGGA GGACCTGAAG GTGGAGGACG TGCACAACCA GCTGGGTTTG CCGTTTCTGA ACGTGGGCGA GCGGTGCAAC ATAGCCGGGT CGATCAAGTT CAAAAAGCTC ATGATGAAGG GCGATTACGG CGCGGCCATG GACATTGCGA AGCAGCAGGT GGAGGACGGC GCGCACGTGA TCGACATCAA CGTGGACGAC GGTATGCTGG ATGGCCTAGC GGCGATGCAA AAGTTTGTGA AGATCGCGGT GACGGAACCG GAGATTGCCA AGGTGCCGTT CATGCTGGAC GCGTCCAAGT TTGACATTGT CATGGCGGGT CTCAAGTGGT GTCAGGGCAA GTGCATTGTG AACTCGATTT CGCTCAAGGT GGGCGAGGAG CTGTTTATGG AGCAGGCCAC GTTGCTGAAG AAGCACGGCG CCGCGGTGGT TGTCATGGCC TTTGATGAGC AGGGTCAAGC GGCCACGGAA GACGAGAAGA TCCGTATCTG CAAGCGGTCG TACGACGTTC TGGTGAACAA GGTGGGTTTC CCACCGGAGG ACATTGTGTT CGACCCGAAC GTACTGACGA TTGGTACGGG TATGGAAGAG CACGCGAACT ACGGTGTGGA TTTTATCAAT TCTGTGAAGC GCATCAAGGA GGAGTGTCCG TACGTGAAGA TTAGTGGGGG TATCTCGAAC TTGTCGTTTG GCTTCCGGGG TGTGACGAAG ATCCGGGAAT CGATCCACGC GGTGTTCTTG CACCACGCTA TTACCGAGTC GGGCATGGAT GTTGGCATCG TGAACTCGCA CGAGCTACTG TCCGTTGATG ACTTGGAACC CGATATGAAG CTTTTGTGCG AAAACCTTGT ATTCAATAAG ACTCCCGATG CCACAGATGA TATGCTTGAA CGTACAAACT TCGAGCGATC CGTCCTGGAA GCCAAAAAGA AAGGCTTGCC CCCGCCGCGT AAACCGCGAG GCAAGCTTCC GAATCTTCCA CGGGTCGAGT TTGACTACGA CAAGATTCCC CCCAAGCCCG CTACGGAACC GCCCCTGCCG ACTTCCGCCG CCGCTCGCAA TCACGTGCCC AATCCCTACG TCAATACGAC TCTCACGCAC GAGCGGATCC AAGAAATCCG TAGTCGCAGT ACCCTGTCCC CCGCGCAGCG GAACGACATT GACTACCCAC AACCGGTGGA CCTGTACCCC ACGGACTTTC CGTACTATGT GCGGGGTCGC GACAGTCTGC GGACCTACAT CACGAAGCTG TTTACGTCGC AGATTGCCAT TTACGACGGG GCCATGGGCA CCATGATCCA GAACTACGCC AAGAAGAACC GACTAGACGA GGAAGAGTAC CGGGGCGAGC GATTCCGCGA CTGGAACTGC GCCGTCAAGG GCAACAACGA CATGCTCAGC ATCTCGCAGC CCCACATCAT CAAGGGTATC TACATGCAGT ACCTGGAAGA GGGCGGCAGC AACATGATTG GGACCAACAC GTTTTCCTCC ACCACCATTG CCATGGCGGA CTACCAGATG GAAGCGTACG CGTACGAGCT GAACTACGTG GGCGCTCGGT TGGCGCGGGA GGCCTGCGAT GAAGTGACGG CCAAAGACCC TAGTAAGCCG CGTTTCGTGG TGGGAGCCAT TGGACCCACG AATCGTACGT GTTCGATCTC GCCGTCGGTG GAGGACCCCG CGGCGCGCAA CGTGACGTTT GACGAGCTGG TAGAGACGTA CCTGGAGCAG GTGGTGGGTC TGGTGGACGG TGGTGCTGAC GTGCTAATGG TGGAGACCAT CTTCGACACG CTGAACGCCA AGGCGGCGTT GTACGCGATC GGAGAGTTTT TGGAGTTTAG CGGGTTGGAC ATTCCCGTGT TTGTGAGTGG CACACTGGTG GACCAGTCGG GTCGTACACT GTCGGGACAG ACGGGCGAGG CTTTTTACGT TTCGATCCGG CACGCCAAGC CGATGTGTGT GGGCTTGAAC TGTGCGTTGG GCGCCAAGCA CATGGTACCC TTTGTGGAGC GCTTGAGCAA GGCGGCCGAG TGTTTTGTGC ACGTGTACTC GAACGCGGGT CTGCCCAACG CCATGGGCGG GTACGACGAC ACGCCGGAAG ACATGGCGCG CGAGAACGAG GTGTTTTTCG AGAACGGCTG GTTGAACATG GTCGGAGGGT GCTGCGGGTC CACGCCGCCG CACATCAAGG CCATCCGCGA GACGGCAGAG CGGTACCAGC CCCGCAAGCT GCCGGATGTG GGCCGGCCCA AGATGTGGCT GTCGGGGCTG GAGGACCTGA AGGTGGAGGA CGTGCACAAC CAGCTGGGTT TGCCGTTTCT GAACGTGGGC GAGCGGTGTA ACATAGCCGG GTCGATCAAG TTCAAAAAGC TCATGATGAA GGGCGATTAC GGCGCGGCCA TGGACATTGC GAAGCAGCAG GTGGAGGACG GCGCGCACGT GATCGACATC AACGTGGACG ACGGTATGCT GGATGGCCTA GCGGCGATGC AAAAGTTTGT GAAGATCGCG GTGACGGAGC CGGAGATTGC CAAGGTGCCG TTCATGCTGG ACGCGTCCAA GTTTGACATT GTCATGGCGG GTCTCAAGTG GTGTCAGGGC AAGTGCATTG TGAACTCGAT TTCGCTCAAG GTGGGCGAGG AGCTGTTCAT GGAGCAGGCC ACGTTGCTGA AGAAGCACGG CGCCGCGGTG GTTGTCATGG CCTTTGACGA GCAGGGTCAA GCGGCCACGG AAGACGAGAA GATCCGTATC TGCAAGCGGT CGTACGACGT TCTGGTGAAC AAGGTGGGTT TCCCACCGGA GGACATTGTG TTCGACCCGA ACGTACTGAC GATCGGTACG GGTATGGAAG AGCACGCGAA CTACGGTGTG GATTTTATCA ACTCTGTGAA GCGCATCAAG GAGGAGTGTC CGTACGTGAA GATTAGTGGG GGTATCTCGA ACTTGTCGTT TGGCTTCCGG GGTGTGACGA AGATCCGGGA ATCGATCCAC GCGGTGTTCT TGCACCATGC TATTACCGAG TCGGGCATGG ATGTTGGCAT CGTGAACTCC GCCGAAATGC TGGCAATCAG CGAGGTTGAA CCCGAGCTTC GCATTGCTTC TGAAAACCTT GTATTCAATA AAAATCCGGA GGCTACTGAT ACTATGCTCT TGCTCACGCA AAAGGAGCGT GATGCCATGG AGGCTCGGAA GAAAGGTGGA GTTGTGGACG AGGTCAAAAA GTCTTCCTGG CGCGATCTTG AACCGTCCAA GCGACTGGAG CATTCATTGG TGAACGGTAT TTCCGAATTT GTCGATTCAG ACGTCGAAGA AGCTCGCGTG TTGGCCACCA AGCCACTAGA TGTAATTGAG GGACCCTTAA TGGACGGCAT GAACGTTGTC GGGGACTTGT TTGGAGCGGG AAAGATGTTT CTACCACAAG TCATCAAGTC TGCACGGGTC ATGAAAAAGG CAGTCGCCTA TCTGTTACCG TTTATGGATG CAGAGAAGAG GGAAAATATG ATTGCGGCTG GCTTGGATCC AGATGACGTT GATCCTGATG ACGACTCGAA TTACGCTGGC AAAGTGCTGA TGGCCACAGT CAAGGGAGAT GTTCATGACA TTGGAAAGAA TATCGTCGCT GTTGTCCTTG GATGCAACAA CTATAAAGTT TACGACATTG GTGTAATGTG CTCGTGTGAA AAAATTCTCG CCAAGGCTAA AGAATACAAT GTCGATGTGA TTGGTCTCTC TGGATTAATT ACTCCTTCCT TGGACGAGAT GGTTGATGTT GCCAAAGAAA TGTCCAAGCA AGGTTTCAAG CAACCCTTGC TGATTGGTGG CGCCACTACT TCCAAGATGC ACACATCCGT GAAGATTGCT CCGAGCTACA CAACCCCCGA GCACCCAACA ATTCATGTTC TGGATGCGTC TCGTTCCGTA ACGGTGGTCA ACTCTCTTTT GGGAGAGAAC AAGGGAGAGT TTGTGGAGGA TATTATGGAG GAGTACGAAG AAATGCGTGA AGATTACTAT GCAGGGCTCG AGGACCGCAA CTTTTTAACT TTTGAGAAGG CCAAGGAGCA AAAGATTACG ATCAACTTTG ATCAATCACC GGTTGCAGAC ACTCCAAACA AAATCGGCAT AACCGTCATT GATACGGTCA AGATTTCGGC GGTTGTTCCT TACATTGATT GGAATCCATT CTTTCAGACG TGGGAGCTGC GTGGTCGATA CCCGAATCGA GGCTATCCCA AGATTTTTAA CGACGAAGCG GTCGGAGGCG AAGCCAAGAA ACTTTTCCAT GATGCGCAGA CGATGCTGAA TCAAATCTGC GAGGACGGCT CCATGACGTT GAAGGGAGTT GTCGGTATCT TCCCGGCGAA CCGTAGTGAG GATGGCGAGG ATGTGCACGT TTATGAGACG GAAGCCGATC GCGAATCAGG AAATGTGTCG ACTACGTTCT GTATGTTGCG CCAGCAAGCC GAGAAGGAGT CCGACGACCC GTATTTGTCC CAAGCCGACT TTGTCGCCCC CGCGGGTTAC AAGGATCACT TGGGTATGTT TGCTGTTTCT TGTTTTGGTT GTGACGCTCT AGTGAAGAAG TTCGAATCCG AGAACGACGA CTATTCCAAG ATTATGGCAC AAGCTTTGGC GGATCGTTTC GTCGAGGCGT TTGCCGAGTA CGTGCACCGC GAGATGCGTC TGGATCTCTG GGGATACGCG GCTGGCGAAC AATTGAACGA GTCCGATTTG CTCAAGGTGA AATACGACGG TATTCGCCCC GCTCCGGGTT ACCCGTCGCA GCCGGACCAT ACGGAAAAAC GCACAATGTG GAATCTCCTG CAGGCGCAGG AACTGGCCGG CATTGAATTG TCGGAATCGC TGAGCATGAT GCCGGCGTCG TCCGTTTCGG CGTTGGTCTT TGCGCACCCC GAGTCCGAGT ACTTTGCCGT GGGCCAAGTG GGTAAAGATC AGGTAACGAA TTACGCGTCA CGCAAACAGA TGGATTTGGC ACTCTGCGAA CGATGGCTGT CTCCTATTCT TAATTACGAA CGAGATTAAA ACCCTGTAAG GTGTCGAGAG AAAAAAGCCG TCGGTGATAT ATTGCAATAA TCCATGGTAT AATTATGC
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Protein sequence | MGTMIQNYAK KNRLDEEEYR GERFRDWNCA VKGNNDMLSI SQPHIIKGIY MQYLEEGGSN MIGTNTFSST TIAMADYQME AYAYELNYVG ARLAREACDE VTAKDPSKPR FVVGAIGPTN RTCSISPSVE DPAARNVTFD ELVETYLEQV VGLVDGGADV LMVETIFDTL NAKAALYAIG EFLEFSGLDI PVFVSGTLVD QSGRTLSGQT GEAFYVSIRH AKPMCVGLNC ALGAKHMVPF VERLSKAAEC FVHVYSNAGL PNAMGGYDDT PEDMARENEV FFENGWLNMV GGCCGSTPPH IKAIRETAER YQPRKLPDVG RPKMWLSGLE DLKVEDVHNQ LGLPFLNVGE RCNIAGSIKF KKLMMKGDYG AAMDIAKQQV EDGAHVIDIN VDDGMLDGLA AMQKFVKIAV TEPEIAKVPF MLDASKFDIV MAGLKWCQGK CIVNSISLKV GEELFMEQAT LLKKHGAAVV VMAFDEQGQA ATEDEKIRIC KRSYDVLVNK VGFPPEDIVF DPNVLTIGTG MEEHANYGVD FINSVKRIKE ECPYVKISGG ISNLSFGFRG VTKIRESIHA VFLHHAITES GMDVGIVNSH ELLSVDDLEP DMKLLCENLV FNKTPDATDD MLERTNFERS KGGVVDEVKK SSWRDLEPSK RLEHSLVNGI SEFVDSDVEE ARVLATKPLD VIEGPLMDGM NVVGDLFGAG KMFLPQVIKS ARVMKKAVAY LLPFMDAEKR ENMIAAGLDP DDVDPDDDSN YAGKVLMATV KGDVHDIGKN IVAVVLGCNN YKVYDIGVMC SCEKILAKAK EYNVDVIGLS GLITPSLDEM VDVAKEMSKQ GFKQPLLIGG ATTSKMHTSV KIAPSYTTPE HPTIHVLDAS RSVTVVNSLL GENKGEFVED IMEEYEEMRE DYYAGLEDRN FLTFEKAKEQ KITINFDQSP VADTPNKIGI TVIDTVKISA VVPYIDWNPF FQTWELRGRY PNRGYPKIFN DEAVGGEAKK LFHDAQTMLN QICEDGSMTL KGVVGIFPAN RSEDGEDVHV YETEADRESG NVSTTFCMLR QQAEKESDDP YLSQADFVAP AGYKDHLGMF AVSCFGCDAL VKKFESENDD YSKIMAQALA DRFVEAFAEY VHREMRLDLW GYAAGEQLNE SDLLKVKYDG IRPAPGYPSQ PDHTEKRTMW NLLQAQELAG IELSESLSMM PASSVSALVF AHPESEYFAV GQVGKDQVTN YASRKQMDLA LCERWLSPIL NYERD
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