Gene PHATRDRAFT_39978 details

Gene Information

• Locus tag: PHATRDRAFT_39978
• ID: 7195579
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011689
• Strand: -
• Start bp: 503898
• End bp: 505964
• Gene Length: 2067 bp
• Protein Length: 688 aa
• GC content: 55%
• Product: predicted protein
• Protein accession: XP_002184008
• Protein GI: 219127575

Plasmid Coverage information

• Num covering plasmid clones: 22
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAAAAG AAAATAAGGA ATTTCGAGTC ACGCACAACC GTGAACGGTC CGCAACGCCG 
ACACCGACCA TGAACCCCTC TCATGGGCTG GGTTGGGCCG CGACAGACTC GCGTTGGCAA 
CGACCCCCGA CTCGTTCAGT CTTTGGAGTT GACACTGACA GTGCGGCCAT GGCGTCAAGA 
AAGCCTCTTG CACTGGGAAC TGCTTTTGTT GACGGCGGCT CCTTCGCGCA CCGTCGAGGA 
CTCCGACCCC GCTCGGAATC TCCGCGCCAT CATCACGCGC TACTGGCGGA ATCGTCGCCC 
TCGATGCACC GTCACGACGT CGACTATCGT ACCCACGACG ATAACGGTAA TCGCAACCGC 
AATTACGACA GTAACAACAA CAACAAGGTT CCAAGACCGG GAGATGGAGG ACAGACACAA 
TCTTCCTCCA GCCGCAACCT TAACAATCAA TCGATACGTC GATCCATTGT CGCACCAATC 
CCCGCCGTCT CTTTCAACGA CAACGCCGGG ATCTTCTACA ACGATTACGA TGGCGGTGAT 
GACGACAACC TGAGTAGAAG AAGTTACAAC ACAGCGACGA TGAACCTGCA CAAAACAACC 
CGCTTGCAAT CGTTTCTGCA TCTCCTTAAA GGCTACGTAG GCCCGGGCTG TCTCAGCCTA 
CCCTGGGCCG TCTCCCAGCT CGGCATTACG TCCGGTGTCA TTGCAACCTT TGTCATGGCT 
TACTGGAGCT CGTACAACTG CTGGACTGTT GTGCGCTTCA AACGCATCTG TCAGAATTCC 
AACCACTACG GTCCCTTGCC TTTGACGTAT CCGGACCTTG CTGGTTGGCT CTACGGACCC 
CGCTTCCAGC GTTTTACCAC AACTTGCATC TGCATTCAGC AACTCGCAAT TTGCACCGTC 
TTTCTCAGCT TTGTTGGTGC CAACTTGAGT GCCGTATTGG TGGCCGTTTG GTCCGTTCCG 
CTCACTCACG TGCAAGTCAT TTCGTGCTGC TTGCCCGCGG TCCTCGCTTT GTCCTTTCTG 
CCCAATCTCA AGGCACTGGC GCCGGCGACG GCGACCGGAG CGGCGTTTCT GGGCTTGGCT 
TTGCTCTGTT TGAGTACCGT CATTGGCCTC CAATGGAACG ATCGACCCCG GCACGAAGCT 
CTGTCCGTGG ATTGGACCAG TGTGCCCTTG GCTTTTTGTG CCATCTTGTA CAGTTACGAG 
GGCATTTGCC TCGTCCTTCC GGTGGAATCC AGTATGCAAC GGCCGGAACA CTTTCAAAGC 
ACCTTTGTGA CGGCCATGAT AGCTTCGGCT GTCGTCTTTG CCCTCGTGGC CTCATTCTGT 
GTGGCAGCTT TTGGGCCAGT GACGAACGGT TCCGTCACCG CCTTTTTGCT GGAAAAGTAT 
GCCGATCGGC GTCACTTGCA GGGATTGTTG CTAGCGGCCA ACGGATTCGT GAGTCTTTCC 
GTTCTGGTCA CGTATCCGTT GCAGCTATTT CCCGCTCTGG AGTTGGTGGG ACCCTGGTTT 
CGGCCTTGGG AGAGATGGGT GCAATCATGG GGATCGTCGA CGACCACATC AACCTCGACC 
AATATACAGA CCAACTTCAC ATCACTTACC AACACCGACG AGTCCGCATC GGACTCGCAC 
AATCAGTACA GCGCCGATGA CGTCCACGAC GAACGCATGG AACCGCTCGA TATTAGTCCC 
GTATCCAGTG TCGCCCGTTC GGCACTAGTG GAAGCGGCTC CGGAGGCCAG CCATTCCCCG 
GTTGCCAGAA TATCGCTAGT AATGCTCACA TACGTGGTCG CCGTGGCAGT TCCCAACGTA 
CAGATCCTCA TCTCGTTAGC GGGCGCCTTG GCCGGCTCGT CGACAGCCTT GCTCATTCCT 
CCCGCGCTCG AACTGGCGTA TTTGAAACAG TACGGCACGG AAAGTGATAC CATGTCGATA 
GGCATGGTTT CCCTGCGAGT ATACATTCTG TTGGCCTTGG GATTGATCTT CATGGGCATT 
GGGACTGGGG CGTCTTTGTT GGATATCTAC CGGGTCTATA CGCAAAGTGG CGAAGAAACG 
GGTTCCGACA GCGCGTCCTC CGTGTAA 

 

Protein sequence

MKKENKEFRV THNRERSATP TPTMNPSHGL GWAATDSRWQ RPPTRSVFGV DTDSAAMASR 
KPLALGTAFV DGGSFAHRRG LRPRSESPRH HHALLAESSP SMHRHDVDYR THDDNGNRNR 
NYDSNNNNKV PRPGDGGQTQ SSSSRNLNNQ SIRRSIVAPI PAVSFNDNAG IFYNDYDGGD 
DDNLSRRSYN TATMNLHKTT RLQSFLHLLK GYVGPGCLSL PWAVSQLGIT SGVIATFVMA 
YWSSYNCWTV VRFKRICQNS NHYGPLPLTY PDLAGWLYGP RFQRFTTTCI CIQQLAICTV 
FLSFVGANLS AVLVAVWSVP LTHVQVISCC LPAVLALSFL PNLKALAPAT ATGAAFLGLA 
LLCLSTVIGL QWNDRPRHEA LSVDWTSVPL AFCAILYSYE GICLVLPVES SMQRPEHFQS 
TFVTAMIASA VVFALVASFC VAAFGPVTNG SVTAFLLEKY ADRRHLQGLL LAANGFVSLS 
VLVTYPLQLF PALELVGPWF RPWERWVQSW GSSTTTSTST NIQTNFTSLT NTDESASDSH 
NQYSADDVHD ERMEPLDISP VSSVARSALV EAAPEASHSP VARISLVMLT YVVAVAVPNV 
QILISLAGAL AGSSTALLIP PALELAYLKQ YGTESDTMSI GMVSLRVYIL LALGLIFMGI 
GTGASLLDIY RVYTQSGEET GSDSASSV