| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_49056 |
|---|
| Symbol | |
|---|
| ID | 7195426 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011688 |
|---|
| Strand | - |
|---|
| Start bp | 448003 |
|---|
| End bp | 449764 |
|---|
| Gene Length | 1762 bp |
|---|
| Protein Length | 504 aa |
|---|
| Translation table | |
|---|
| GC content | 57% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002183750 |
|---|
| Protein GI | 219127036 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.3635 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | CACCCCGCAC ACACTCACTC TCGCTGGATT CTTTCTGTGG TCATTGCGTT ACTTTGCCTT
CGTCTTCTCG ACGACAGACT GTTACAACCA CATCCTTGTC GCTCTCACCA ATTCCAATCA
TGCCTTCGGT GACGTACAGT AGTACCCGCG GCGGTCAAAC GAACCTCGCC TTTCGGGATG
TGGTAATGCA GGGTTTGGCG CACGATCGGG GCTTGTTCGT CCCGGACCGT CTACCGACGG
TGAGCACGAC GGAACTGGAA TCCTGGCGAT CTCTGTCGTA CGCCGAATTA GCGGTCAACG
TCATTGCCAA GTTCGTCGGC GACGATCAGG TGCCCTTGCC CAATTTACGG GATATTGTCA
CCCGGTCGTG TGCAGCCTTT CGCGACGCAC AAGTCACGCC CCTCGTTCAC GTCGGGGGAC
ATTACGTGTT GGTACGTACG CCATCTGTTA CGGAGAGTCT CGGATCATTC TCGTGTCGAC
GCTTCTTTTT GGAGAGACTC TCACACCACT GAACTACTCA CTCTCTGGGT CGTTTCCGGG
GACGGTATCA ATTTCACAGG AGCTATTTCA CGGACCCACC TTTGCTTTCA AAGACGTGGC
TTTGCAAATG CTCGGCAACT TTTTCGAATA CTTTTTGAGT ACGGGCAGTA ACGGGGGTCG
CCTCGCCGTG TTGGGCGCCA CGTCCGGGGA TACCGGTTCG GCCGCCATTG CCGGATTGCG
CGGCAAAAAG GGCATCACTT GCGTCATTTT GTTCCCCAAC GGACGCGTCT CGGCCATACA
GGAACGACAA ATGACCACCG TGCCGGACGA GAACGTGCAC TGTGTCGCTA TCGACGGCAC
CTTTGATGAT TGTCAAGATA TCGTCAAGGC GAGTTTCAAC ACACCGGCCT TTCGGGACAA
GGTGCACCTG GGAGCGGTCA ATTCCATTAA TTGGTGTCGT GTTTTGGCGC AGACGACCTA
TTACTACTGG AGTTACTTGC GTGTGACGGA CGCCCACAAG GACATCCCGG AAGTCCATTT
TTCCGTCCCG ACGGGAAACT TTGGGGACGT TCTGGCCGGT TACTACGCCA AGCAAATGGG
TCTGCCCGTA GGCAAATTGA TCGTCGCCAC CAACGAAAAC GACATTCTGC ATCGCTTCTT
TACCGCCGGC GAGTACCACC GCGAATCGAT TGCGGAGACG ATCTCACCCA GCATGGATAT
TTGCGTCAGC AGCAACTTTG AACGCTACCT GTTCCACTTG GCCGGCAACG ACGCGAGCAT
GCTGAGCGCG TGGATGCAAG CCTTTGAAAA GACGGGCCAA CTGACCATTC AAGGTGACCT
GTTGCGGCAG GCCCAGGCCG ACTTTGATTC TTGTCGTGGC GATACGTCGC AGACTCTCGC
CACGATTGAA ACTTACCACC AGAAGCATCA GTACGTCTTG TGTCCGCATT CCGCGGTGGG
TGTGTACGCT ATCCACCAGT TGTCCCTGGT TTCGTCGGCC ACGGTCTGTT TGGCCACGGC
CCACGAAGCC AAATTCCCCG CCGCCGTGGC TCAGGTCGTG GAACCAATGC CACCCCCACC
GACCGAACTC GCTGTTCTCC GGGACTTGCC CACCCGTCGC GTCGAATTAC CGAACGACCT
GGCCACGGTA CAAGCCTTTG TGGAAGAGTG CGTCTTTTCT CGGCCACGCA AATGGCAAGC
GGTGGCGAAA CATTTGGCCG CGGTGACCGT GGCGGTGGGT GTTGCCGCCG TGGCGTTGCA
AGCCATGACC CGGCGACGAT AA
|
|---|
| Protein sequence | MPSVTYSSTR GGQTNLAFRD VVMQGLAHDR GLFVPDRLPT VSTTELESWR SLSYAELAVN
VIAKFVGDDQ VPLPNLRDIV TRSCAAFRDA QVTPLVHVGG HYVLELFHGP TFAFKDVALQ
MLGNFFEYFL STGSNGGRLA VLGATSGDTG SAAIAGLRGK KGITCVILFP NGRVSAIQER
QMTTVPDENV HCVAIDGTFD DCQDIVKASF NTPAFRDKVH LGAVNSINWC RVLAQTTYYY
WSYLRVTDAH KDIPEVHFSV PTGNFGDVLA GYYAKQMGLP VGKLIVATNE NDILHRFFTA
GEYHRESIAE TISPSMDICV SSNFERYLFH LAGNDASMLS AWMQAFEKTG QLTIQGDLLR
QAQADFDSCR GDTSQTLATI ETYHQKHQYV LCPHSAVGVY AIHQLSLVSS ATVCLATAHE
AKFPAAVAQV VEPMPPPPTE LAVLRDLPTR RVELPNDLAT VQAFVEECVF SRPRKWQAVA
KHLAAVTVAV GVAAVALQAM TRRR
|
|---|
| |